Tuulia Hyötyläinen

Articles in journals

• Latif, M. , Ferrieres, L. , Hyötyläinen, T. & Jass, J. (2025). Biocide-resistant Pseudomonas oleovorans isolated from water-based coatings used in construction.  Journal of Industrial Microbiology & Biotechnology. [BibTeX]
• Alijagic, A. , Särndahl, E. , Kotlyar, O. , Karlsson, P. , Duberg, D. , Scherbak, N. , Pinsino, A. , Engwall, M. & et al. (2025). Nanoplastics drive toxicity under co-exposure with perfluorooctanesulfonic acid in human intestinal cells.  Environmental Chemistry Letters. [BibTeX]
• Nilén, G. , Larsson, M. , Hyötyläinen, T. & Keiter, S. (2024). A complex mixture of polycyclic aromatic compounds causes embryotoxic, behavioral, and molecular effects in zebrafish larvae (Danio rerio), and in vitro bioassays.  Science of the Total Environment, 906. [BibTeX]
• Herzig, M. , Hyötyläinen, T. , Vettese, G. F. , Law, G. T. W. , Vierinen, T. & Bomberg, M. (2024). Altering environmental conditions induce shifts in simulated deep terrestrial subsurface bacterial communities-Secretion of primary and secondary metabolites.  Environmental Microbiology, 26 (1). [BibTeX]
• Isokääntä, H. , Pinto da Silva, L. , Karu, N. , Kallonen, T. , Aatsinki, A. , Hankemeier, T. , Schimmel, L. , Diaz, E. & et al. (2024). Comparative Metabolomics and Microbiome Analysis of Ethanol versus OMNImet/gene•GUT Fecal Stabilization.  Analytical Chemistry, 96 (22), 8893-9304. [BibTeX]
• Karlsson, J. , Lopez-Sanchez, P. , Marques, T. M. , Hyötyläinen, T. , Castro Alves, V. , Krona, A. & Ström, A. (2024). Effect of heating of pea fibres on their swelling, rheological properties and in vitro colon fermentation.  Food Hydrocolloids, 147. [BibTeX]
• Salihovic, S. , Eklund, D. , Kruse, R. , Wallgren, U. , Hyötyläinen, T. , Särndahl, E. & Kurland, L. (2024). Exploring the circulating metabolome of sepsis: metabolomic and lipidomic profiles sampled in the ambulance.  Metabolomics, 20 (5). [BibTeX]
• Sen, P. , Fan, Y. , Schlezinger, J. J. , Ehrlich, S. D. , Webster, T. F. , Hyötyläinen, T. , Pedersen, O. & Oresic, M. (2024). Exposure to environmental toxicants is associated with gut microbiome dysbiosis, insulin resistance and obesity.  Environment International, 186. [BibTeX]
• Sabatini, S. , Sen, P. , Carli, F. , Pezzica, S. , Rosso, C. , Lembo, E. , Verrastro, O. , Daly, A. & et al. (2024). Hepatic glucose production rises with the histological severity of metabolic dysfunction-associated steatohepatitis.  Cell Reports Medicine, 5 (11). [BibTeX]
• Salihovic, S. , Nyström, N. , Mathisen, C. B. , Kruse, R. , Olbjørn, C. , Andersen, S. , Noble, A. J. , Dorn-Rasmussen, M. & et al. (2024). Identification and validation of a blood- based diagnostic lipidomic signature of pediatric inflammatory bowel disease.  Nature Communications, 15 (1). [BibTeX]
• Hyötyläinen, T. , Ghaffarzadegan, T. , Karthikeyan, B. S. , Triplett, E. , Oresic, M. & Ludvigsson, J. (2024). Impact of Environmental Exposures on Human Breast Milk Lipidome in Future Immune-Mediated Diseases.  Environmental Science and Technology, 58 (5), 2214-2223. [BibTeX]
• Hyötyläinen, T. , McGlinchey, A. J. , Salihovic, S. , Schubert, A. , Douglas, A. , Hay, D. C. , O'Shaughnessy, P. J. , Iredale, J. P. & et al. (2024). In utero exposures to perfluoroalkyl substances and the human fetal liver metabolome in Scotland: a cross-sectional study.  The Lancet Planetary Health, 8 (1), e5-e17. [BibTeX]
• Ahrens, A. P. , Hyötyläinen, T. , Petrone, J. R. , Igelström, K. , George, C. D. , Garrett, T. J. , Oresic, M. , Triplett, E. W. & et al. (2024). Infant microbes and metabolites point to childhood neurodevelopmental disorders.  Cell, 187 (8), 1853-1873.e15. [BibTeX]
• Alijagic, A. , Sinisalu, L. , Duberg, D. , Kotlyar, O. , Scherbak, N. , Engwall, M. , Oresic, M. & Hyötyläinen, T. (2024). Metabolic and phenotypic changes induced by PFAS exposure in two human hepatocyte cell models.  Environment International, 190. [BibTeX]
• Rotander, A. , Ramos, M. J. G. , Mueller, J. F. , Toms, L. & Hyötyläinen, T. (2024). Metabolic changes associated with PFAS exposure in firefighters: A pilot study.  Science of the Total Environment, 935. [BibTeX]
• Latif Ali, M. , Ferrieres, L. , Jass, J. & Hyötyläinen, T. (2024). Metabolic Changes in Pseudomonas oleovorans Isolated from Contaminated Construction Material Exposed to Varied Biocide Treatments.  Metabolites, 14 (6). [BibTeX]
• Karlsson, J. , Lopez-Sanchez, P. , Marques, T. M. , Hyötyläinen, T. , Castro Alves, V. , Krona, A. & Ström, A. (2024). Physico-chemical properties of pea fibre and pea protein blends and the implications for in vitro batch fermentation using human inoculum.  Food Hydrocolloids, 150. [BibTeX]
• Bagavathy Shanmugam, K. , Hyötyläinen, T. , Ghaffarzadegan, T. , Triplett, E. , Oresic, M. & Ludvigsson, J. (2024). Prenatal exposure to environmental contaminants and cord serum metabolite profiles in future immune-mediated diseases.  Journal of Exposure Science and Environmental Epidemiology, 34 (4), 647-658. [BibTeX]
• Thomas, I. , Newcombe, V. F. J. , Dickens, A. M. , Richter, S. , Posti, J. P. , Maas, A. I. R. , Tenovuo, O. , Hyötyläinen, T. & et al. (2024). Serum lipidome associates with neuroimaging features in patients with traumatic brain injury.  iScience, 27 (9). [BibTeX]
• Alijagic, A. , Scherbak, N. , Kotlyar, O. , Karlsson, P. , Wang, X. , Odnevall, I. , Benada, O. , Amiryousefi, A. & et al. (2023). A Novel Nanosafety Approach Using Cell Painting, Metabolomics, and Lipidomics Captures the Cellular and Molecular Phenotypes Induced by the Unintentionally Formed Metal-Based (Nano)Particles.  Cells, 12 (2). [BibTeX]
• Hylén, U. , Särndahl, E. , Bejerot, S. , Humble, M. B. , Hyötyläinen, T. , Salihovic, S. & Eklund, D. (2023). Alterations in inflammasome-related immunometabolites in individuals with severe psychiatric disorders.  BMC Psychiatry, 23 (1). [BibTeX]
• Laudette, M. , Lindbom, M. , Arif, M. , Cinato, M. , Ruiz, M. , Doran, S. , Miljanovic, A. , Rutberg, M. & et al. (2023). Cardiomyocyte-specific PCSK9 deficiency compromises mitochondrial bioenergetics and heart function.  Cardiovascular Research, 119 (7), 1537-1552. [BibTeX]
• Lamichhane, S. , Sen, P. , Dickens, A. M. , Kråkström, M. , Ilonen, J. , Lempainen, J. , Hyöty, H. , Lahesmaa, R. & et al. (2023). Circulating metabolic signatures of rapid and slow progression to type 1 diabetes in islet autoantibody-positive children.  Frontiers in Endocrinology, 14. [BibTeX]
• Hyötyläinen, T. , Bagavathy Shanmugam, K. , Ghaffarzadegan, T. , Triplett, E. W. , Oresic, M. & Ludvigsson, J. (2023). Cord serum metabolic signatures of future progression to immune-mediated diseases.  iScience, 26 (3). [BibTeX]
• Kråkström, M. , Dickens, A. M. , Alves, M. A. , Forssten, S. D. , Ouwehand, A. C. , Hyötyläinen, T. , Oresic, M. & Lamichhane, S. (2023). Dynamics of the Lipidome in a Colon Simulator.  Metabolites, 13 (3). [BibTeX]
• Seeburger, P. , Forsman, H. , Bevilacqua, G. , Marques, T. M. , Morales, L. O. , Prado, S. B. R. , Strid, Å. , Hyötyläinen, T. & et al. (2023). From farm to fork… and beyond! UV enhances Aryl hydrocarbon receptor-mediated activity of cruciferous vegetables in human intestinal cells upon colonic fermentation.  Food Chemistry, 426. [BibTeX]
• Lamichhane, S. , Härkönen, T. , Vatanen, T. , Hyötyläinen, T. , Knip, M. & Oresic, M. (2023). Impact of exposure to per- and polyfluoroalkyl substances on fecal microbiota composition in mother-infant dyads.  Environment International, 176. [BibTeX]
• Fan, Y. , Støving, R. K. , Berreira Ibraim, S. , Hyötyläinen, T. , Thirion, F. , Arora, T. , Lyu, L. , Stankevic, E. & et al. (2023). The gut microbiota contributes to the pathogenesis of anorexia nervosa in humans and mice.  Nature Microbiology, 8 (5), 787-802. [BibTeX]
• Sommer, S. G. , Castro Alves, V. , Hyötyläinen, T. , Strid, Å. & Rosenqvist, E. (2023). The light spectrum differentially influences morphology, physiology and metabolism of Chrysanthemum × morifolium without affecting biomass accumulation.  Physiologia Plantarum, 175 (6). [BibTeX]
• Seeburger, P. , Herdenstam, A. P. F. , Kurtser, P. , Arunachalam, A. , Castro Alves, V. , Hyötyläinen, T. & Andreasson, H. (2022). Controlled mechanical stimuli reveal novel associations between basil metabolism and sensory quality.  Food Chemistry, 404 (Pt A). [BibTeX]
• Lamichhane, S. , Sen, P. , Dickens, A. M. , Alves, M. A. , Härkönen, T. , Honkanen, J. , Vatanen, T. , Xavier, R. J. & et al. (2022). Dysregulation of secondary bile acid metabolism precedes islet autoimmunity and type 1 diabetes.  Cell Reports Medicine, 3 (10). [BibTeX]
• Sen, P. , Qadri, S. , Luukkonen, P. K. , Ragnarsdottir, O. , McGlinchey, A. J. , Jäntti, S. , Juuti, A. , Arola, J. & et al. (2022). Exposure to environmental contaminants is associated with altered hepatic lipid metabolism in non-alcoholic fatty liver disease.  Journal of Hepatology, 76 (2), 283-293. [BibTeX]
• Sinioja, T. , Bodin, J. , Duberg, D. , Dirven, H. , Berntsen, H. F. , Zimmer, K. , Nygaard, U. C. , Oresic, M. & et al. (2022). Exposure to persistent organic pollutants alters the serum metabolome in non-obese diabetic mice.  Metabolomics, 18 (11). [BibTeX]
• Lamichhane, S. , Siljander, H. , Salonen, M. , Ruohtula, T. , Virtanen, S. M. , Ilonen, J. , Hyötyläinen, T. , Knip, M. & et al. (2022). Impact of Extensively Hydrolyzed Infant Formula on Circulating Lipids During Early Life.  Frontiers in Nutrition, 9. [BibTeX]
• Lützhøft, D. O. , Sinioja, T. , Christoffersen, B. Ø. , Jakobsen, R. R. , Geng, D. , Ahmad, H. F. B. , Straarup, E. M. , Pedersen, K. & et al. (2022). Marked gut microbiota dysbiosis and increased imidazole propionate are associated with a NASH Göttingen Minipig model.  BMC Microbiology, 22 (1). [BibTeX]
• Palma, C. F. F. , Castro Alves, V. , Morales, L. O. , Rosenqvist, E. , Ottosen, C. , Hyötyläinen, T. & Strid, Å. (2022). Metabolic changes in cucumber leaves are enhanced by blue light and differentially affected by UV interactions with light signalling pathways in the visible spectrum.  Plant Science, 321. [BibTeX]
• McGlinchey, A. J. , Govaere, O. , Geng, D. , Ratziu, V. , Allison, M. , Bousier, J. , Petta, S. , de Oliviera, C. & et al. (2022). Metabolic signatures across the full spectrum of non-alcoholic fatty liver disease.  JHEP Reports, 4 (5). [BibTeX]
• Yin, X. , Mongan, D. , Cannon, M. , Zammit, S. , Hyötyläinen, T. , Oresic, M. , Brennan, L. & Cotter, D. R. (2022). Plasma lipid alterations in young adults with psychotic experiences: A study from the Avon Longitudinal Study of Parents and Children cohort.  Schizophrenia Research, 243, 78-85. [BibTeX]
• Sen, P. , Govaere, O. , Sinioja, T. , McGlinchey, A. J. , Geng, D. , Ratziu, V. , Bugianesi, E. , Schattenberg, J. M. & et al. (2022). Quantitative modeling of human liver reveals dysregulation of glycosphingolipid pathways in nonalcoholic fatty liver disease.  iScience, 25 (9). [BibTeX]
• Thomas, I. , Dickens, A. M. , Posti, J. P. , Czeiter, E. , Duberg, D. , Sinioja, T. , Kråkström, M. , Retel Helmrich, I. R. A. & et al. (2022). Serum metabolome associated with severity of acute traumatic brain injury.  Nature Communications, 13 (1). [BibTeX]
• Lahelma, M. , Qadri, S. , Ahlholm, N. , Porthan, K. , Ruuth, M. , Juuti, A. , Oresic, M. , Hyötyläinen, T. & et al. (2022). The human liver lipidome is significantly related to the lipid composition and aggregation susceptibility of low-density lipoprotein (LDL) particles.  Atherosclerosis, 363, 22-29. [BibTeX]
• Sen, P. , Hyötyläinen, T. & Oresic, M. (2021). 1-Deoxyceramides: key players in lipotoxicity and progression to type 2 diabetes?.  Acta Physiologica, 232 (1). [BibTeX]
• Karpale, M. , Käräjämäki, A. J. , Kummu, O. , Gylling, H. , Hyötyläinen, T. , Oresic, M. , Tolonen, A. , Hautajärvi, H. & et al. (2021). Activation of nuclear receptor PXR induces atherogenic lipids and PCSK9 through SREBP2-mediated mechanism.  British Journal of Pharmacology, 178 (12), 2461-2481. [BibTeX]
• Rodriguez-Cuenca, S. , Lelliot, C. J. , Campbell, M. , Peddinti, G. , Martinez-Uña, M. , Ingvorsen, C. , Dias, A. R. , Relat, J. & et al. (2021). Allostatic hypermetabolic response in PGC1α/β heterozygote mouse despite mitochondrial defects.  The FASEB Journal, 35 (9). [BibTeX]
• Blanc, M. , Alfonso, S. , Begout, M. , Barrachina, C. , Hyötyläinen, T. , Keiter, S. H. & Cousin, X. (2021). An environmentally relevant mixture of polychlorinated biphenyls (PCBs) and polybrominated diphenylethers (PBDEs) disrupts mitochondrial function, lipid metabolism and neurotransmission in the brain of exposed zebrafish and their unexposed F2 offspring.  Science of the Total Environment, 754. [BibTeX]
• Hyötyläinen, T. (2021). Analytical challenges in human exposome analysis with focus on environmental analysis combined with metabolomics.  Journal of Separation Science, 44 (8), 1769-1787. [BibTeX]
• Lamichhane, S. , Dickens, A. M. , Sen, P. , Laurikainen, H. , Borgan, F. , Suvisaari, J. , Hyötyläinen, T. , Howes, O. & et al. (2021). Association Between Circulating Lipids and Future Weight Gain in Individuals With an At-Risk Mental State and in First-Episode Psychosis.  Schizophrenia Bulletin, 47 (1), 160-169. [BibTeX]
• Petersen, A. Ø. , Julienne, H. , Hyötyläinen, T. , Sen, P. , Fan, Y. , Pedersen, H. K. , Jäntti, S. , Hansen, T. H. & et al. (2021). Conjugated C-6 hydroxylated bile acids in serum relate to human metabolic health and gut Clostridia species.  Scientific Reports, 11 (1). [BibTeX]
• Holster, S. , Repsilber, D. , Geng, D. , Hyötyläinen, T. , Salonen, A. , Lindqvist, C. M. , Rajan, S. K. , de Vos, W. M. & et al. (2021). Correlations between microbiota and metabolites after faecal microbiota transfer in irritable bowel syndrome.  Beneficial Microbes, 12 (1), 17-30. [BibTeX]
• Kurtser, P. , Castro Alves, V. , Arunachalam, A. , Sjöberg, V. , Hanell, U. , Hyötyläinen, T. & Andreasson, H. (2021). Development of novel robotic platforms for mechanical stress induction, and their effects on plant morphology, elements, and metabolism.  Scientific Reports, 11 (1). [BibTeX]
• Selvaraj, E. A. , Mózes, F. E. , Ajmer Jayaswal, A. N. , Zafarmand, M. H. , Vali, Y. , Lee, J. A. , Levick, C. K. , Joseph Young, L. A. & et al. (2021). Diagnostic accuracy of elastography and magnetic resonance imaging in patients with NAFLD: a systematic review and meta-analysis.  Journal of Hepatology, 75 (4), 770-785. [BibTeX]
• Dickens, A. M. , Sen, P. , Kempton, M. J. , Barrantes-Vidal, N. , Iyegbe, C. , Nordentoft, M. , Pollak, T. , Riecher-Rössler, A. & et al. (2021). Dysregulated Lipid Metabolism Precedes Onset of Psychosis.  Biological Psychiatry, 89 (3), 288-297. [BibTeX]
• Lamichhane, S. , Siljander, H. , Duberg, D. , Honkanen, J. , Virtanen, S. M. , Oresic, M. , Knip, M. & Hyötyläinen, T. (2021). Exposure to per- and polyfluoroalkyl substances associates with an altered lipid composition of breast milk.  Environment International, 157. [BibTeX]
• Andersson, L. , Cinato, M. , Mardani, I. , Miljanovic, A. , Arif, M. , Koh, A. , Lindbom, M. , Laudette, M. & et al. (2021). Glucosylceramide synthase deficiency in the heart compromises β1-adrenergic receptor trafficking.  European Heart Journal, 42 (43), 4481-4492. [BibTeX]
• Brial, F. , Chilloux, J. , Nielsen, T. , Vieira-Silva, S. , Falony, G. , Andrikopoulos, P. , Olanipekun, M. , Hoyles, L. & et al. (2021). Human and preclinical studies of the host-gut microbiome co-metabolite hippurate as a marker and mediator of metabolic health.  Gut, 70 (11), 2105-2114. [BibTeX]
• Castro Alves, V. , Kalbina, I. , Nilsen, A. , Mats, A. , Rosenqvist, E. , Jansen, M. A. K. , Qian, M. , Öström, Å. & et al. (2021). Integration of non-target metabolomics and sensory analysis unravels vegetable plant metabolite signatures associated with sensory quality: A case study using dill (Anethum graveolens).  Food Chemistry, 344. [BibTeX]
• Hyötyläinen, T. , Bodin, J. , Duberg, D. , Dirven, H. , Nygaard, U. C. & Oresic, M. (2021). Lipidomic Analyses Reveal Modulation of Lipid Metabolism by the PFAS Perfluoroundecanoic Acid (PFUnDA) in Non-Obese Diabetic Mice.  Frontiers in Genetics, 12. [BibTeX]
• Lanzon, B. , Martin-Taboada, M. , Castro Alves, V. , Vila-Bedmar, R. , González de Pablos, I. , Duberg, D. , Gomez, P. , Rodriguez, E. & et al. (2021). Lipidomic and Metabolomic Signature of Progression of Chronic Kidney Disease in Patients with Severe Obesity.  Metabolites, 11 (12). [BibTeX]
• Ruuth, M. , Lahelma, M. , Luukkonen, P. K. , Lorey, M. B. , Qadri, S. , Sädevirta, S. , Hyötyläinen, T. , Kovanen, P. T. & et al. (2021). Overfeeding Saturated Fat Increases LDL (Low-Density Lipoprotein) Aggregation Susceptibility While Overfeeding Unsaturated Fat Decreases Proteoglycan-Binding of Lipoproteins.  Arteriosclerosis, Thrombosis and Vascular Biology, 41 (11), 2823-2836. [BibTeX]
• Fart, F. , Salihovic, S. , McGlinchey, A. J. , Gareau, M. G. , Oresic, M. , Halfvarson, J. , Hyötyläinen, T. & Schoultz, I. (2021). Perfluoroalkyl substances are increased in patients with late-onset ulcerative colitis and induce intestinal barrier defects ex vivo in murine intestinal tissue.  Scandinavian Journal of Gastroenterology, 56 (11), 1286-1295. [BibTeX]
• Schlezinger, J. J. , Hyötyläinen, T. , Sinioja, T. , Boston, C. , Puckett, H. , Oliver, J. , Heiger-Bernays, W. & Webster, T. F. (2021). Perfluorooctanoic acid induces liver and serum dyslipidemia in humanized PPAR α mice fed an American diet.  Toxicology and Applied Pharmacology, 426. [BibTeX]
• Jendle, J. , Hyötyläinen, T. , Oresic, M. & Nyström, T. (2021). Pharmacometabolomic profiles in type 2 diabetic subjects treated with liraglutide or glimepiride.  Cardiovascular Diabetology, 20 (1). [BibTeX]
• Hylén, U. , McGlinchey, A. J. , Oresic, M. , Bejerot, S. , Humble, M. B. , Särndahl, E. , Hyötyläinen, T. & Eklund, D. (2021). Potential Transdiagnostic Lipid Mediators of Inflammatory Activity in Individuals With Serious Mental Illness.  Frontiers in Psychiatry, 12. [BibTeX]
• Sinisalu, L. , Yeung, L. W. Y. , Wang, J. , Pan, Y. , Dai, J. & Hyötyläinen, T. (2021). Prenatal exposure to poly-/per-fluoroalkyl substances is associated with alteration of lipid profiles in cord-blood.  Metabolomics, 17 (12). [BibTeX]
• Sen, P. , Andrabi, S. B. A. , Buchacher, T. , Khan, M. M. , Kalim, U. U. , Lindeman, T. M. , Alves, M. A. , Hinkkanen, V. & et al. (2021). Quantitative genome-scale metabolic modeling of human CD4⁺ T cell differentiation reveals subset-specific regulation of glycosphingolipid pathways.  Cell Reports, 37 (6). [BibTeX]
• Salonurmi, T. , Nabil, H. , Ronkainen, J. , Hyötyläinen, T. , Hautajärvi, H. , Savolainen, M. J. , Tolonen, A. , Oresic, M. & et al. (2020). 4β-Hydroxycholesterol Signals From the Liver to Regulate Peripheral Cholesterol Transporters..  Frontiers in Pharmacology, 11. [BibTeX]
• Sinisalu, L. , Sen, P. , Salihovic, S. , Virtanen, S. M. , Hyöty, H. , Ilonen, J. , Toppari, J. , Veijola, R. & et al. (2020). Early-life exposure to perfluorinated alkyl substances modulates lipid metabolism in progression to celiac disease.  Environmental Research, 188. [BibTeX]
• Djekic, D. , Shi, L. , Calais, F. , Carlsson, F. , Landberg, R. , Hyötyläinen, T. & Fröbert, O. (2020). Effects of a Lacto-Ovo-Vegetarian Diet on the Plasma Lipidome and Its Association with Atherosclerotic Burden in Patients with Coronary Artery Disease-A Randomized, Open-Label, Cross-over Study.  Nutrients, 12 (11). [BibTeX]
• Luukkonen, P. K. , Tukiainen, T. , Juuti, A. , Sammalkorpi, H. , Haridas, P. A. N. , Niemelä, O. , Arola, J. , Orho-Melander, M. & et al. (2020). Hydroxysteroid 17-β dehydrogenase 13 variant increases phospholipids and protects against fibrosis in nonalcoholic fatty liver disease.  JCI Insight, 5 (5). [BibTeX]
• Thomas, I. , Dickens, A. M. , Posti, J. P. , Mohammadian, M. , Ledig, C. , Takala, R. S. K. , Hyötyläinen, T. , Tenovuo, O. & et al. (2020). Integrative Analysis of Circulating Metabolite Profiles and Magnetic Resonance Imaging Metrics in Patients with Traumatic Brain Injury.  International Journal of Molecular Sciences, 21 (4). [BibTeX]
• Dickens, A. M. , Borgan, F. , Laurikainen, H. , Lamichhane, S. , Marques, T. , Rönkkö, T. , Veronese, M. , Lindeman, T. & et al. (2020). Links between central CB1-receptor availability and peripheral endocannabinoids in patients with first episode psychosis.  NPJ schizophrenia, 6 (1). [BibTeX]
• Luukkonen, P. K. , Juuti, A. , Sammalkorpi, H. , Penttilä, A. K. , Oresic, M. , Hyötyläinen, T. , Arola, J. , Orho-Melander, M. & et al. (2020). MARC1 variant rs2642438 increases hepatic phosphatidylcholines and decreases severity of non-alcoholic fatty liver disease in humans.  Journal of Hepatology, 73 (3), 725-726. [BibTeX]
• Sen, P. , Dickens, A. M. , López-Bascón, M. A. , Lindeman, T. , Kemppainen, E. , Lamichhane, S. , Rönkkö, T. , Ilonen, J. & et al. (2020). Metabolic alterations in immune cells associate with progression to type 1 diabetes.  Diabetologia, 63 (5), 1017-1031. [BibTeX]
• Blanc, M. , Cormier, B. , Hyötyläinen, T. , Krauss, M. , Scherbak, N. , Cousin, X. & Keiter, S. (2020). Multi- and transgenerational effects following early-life exposure of zebrafish to permethrin and coumarin 47: Impact on growth, fertility, behavior and lipid metabolism.  Ecotoxicology and Environmental Safety, 205. [BibTeX]
• McGlinchey, A. J. , Sinioja, T. , Lamichhane, S. , Sen, P. , Bodin, J. , Siljander, H. , Dickens, A. M. , Geng, D. & et al. (2020). Prenatal exposure to perfluoroalkyl substances modulates neonatal serum phospholipids, increasing risk of type 1 diabetes.  Environment International, 143. [BibTeX]
• Salihovic, S. , Dickens, A. M. , Schoultz, I. , Fart, F. , Sinisalu, L. , Lindeman, T. , Halfvarson, J. , Oresic, M. & et al. (2020). Simultaneous determination of perfluoroalkyl substances and bile acids in human serum using ultra-high-performance liquid chromatography-tandem mass spectrometry.  Analytical and Bioanalytical Chemistry, 412 (10), 2251-2259. [BibTeX]
• Ha, V. T. , Lainšček, D. , Gesslbauer, B. , Jarc-Jovičić, E. , Hyötyläinen, T. , Ilc, N. , Lakota, K. , Tomšič, M. & et al. (2020). Synergy between 15-lipoxygenase and secreted PLA(2) promotes inflammation by formation of TLR4 agonists from extracellular vesicles.  Proceedings of the National Academy of Sciences of the United States of America, 117 (41), 25679-25689. [BibTeX]
• Qadri, S. , Lallukka-Brück, S. , Luukkonen, P. K. , Zhou, Y. , Gastaldelli, A. , Orho-Melander, M. , Sammalkorpi, H. , Juuti, A. & et al. (2020). The PNPLA3-I148M variant increases polyunsaturated triglycerides in human adipose tissue.  Liver international (Print), 40 (9), 2128-2138. [BibTeX]
• Castro Alves, V. , Kalbina, I. , Öström, Å. , Hyötyläinen, T. & Strid, Å. (2020). The taste of UV light: Using sensomics to improve horticultural quality.  UV4Plants Bulletin (1), 39-43. [BibTeX]
• Lamichhane, S. , Kemppainen, E. , Trošt, K. , Siljander, H. , Hyöty, H. , Ilonen, J. , Toppari, J. , Veijola, R. & et al. (2019). Circulating metabolites in progression to islet autoimmunity and type 1 diabetes.  Diabetologia, 62 (12), 2287-2297. [BibTeX]
• Lamichhane, S. , Ahonen, L. , Dyrlund, T. S. , Dickens, A. M. , Siljander, H. , Hyöty, H. , Ilonen, J. , Toppari, J. & et al. (2019). Cord-Blood Lipidome in Progression to Islet Autoimmunity and Type 1 Diabetes.  Biomolecules, 9 (1). [BibTeX]
• Hernández-Alvarez, M. I. , Sebastián, D. , Vives, S. , Ivanova, S. , Bartoccioni, P. , Kakimoto, P. , Plana, N. , Veiga, S. R. & et al. (2019). Deficient Endoplasmic Reticulum-Mitochondrial Phosphatidylserine Transfer Causes Liver Disease.  Cell, 177 (4), 881-895.e17. [BibTeX]
• Geng, D. , Musse, A. A. , Wigh, V. , Carlsson, C. , Engwall, M. , Oresic, M. , Scherbak, N. & Hyötyläinen, T. (2019). Effect of perfluorooctanesulfonic acid (PFOS) on the liver lipid metabolism of the developing chicken embryo.  Ecotoxicology and Environmental Safety, 170, 691-698. [BibTeX]
• Luukkonen, P. K. , Nick, A. , Hölttä-Vuori, M. , Thiele, C. , Isokuortti, E. , Lallukka-Brück, S. , Zhou, Y. , Hakkarainen, A. & et al. (2019). Human PNPLA3-I148M variant increases hepatic retention of polyunsaturated fatty acids.  JCI Insight, 4 (16). [BibTeX]
• Salihovic, S. , Fall, T. , Ganna, A. , Broeckling, C. D. , Prenni, J. E. , Hyötyläinen, T. , Kärrman, A. , Lind, P. M. & et al. (2019). Identification of metabolic profiles associated with human exposure to perfluoroalkyl substances.  Journal of Exposure Science and Environmental Epidemiology, 29 (2), 196-205. [BibTeX]
• Madrid-Gambin, F. , Focking, M. , Sabherwal, S. , Heurich, M. , English, J. A. , O'Gorman, A. , Suvitaival, T. , Ahonen, L. & et al. (2019). Integrated Lipidomics and Proteomics Point to Early Blood-Based Changes in Childhood Preceding Later Development of Psychotic Experiences: Evidence From the Avon Longitudinal Study of Parents and Children.  Biological Psychiatry, 86 (1), 25-34. [BibTeX]
• Sen, P. , Carlsson, C. , Virtanen, S. M. , Simell, S. , Hyöty, H. , Ilonen, J. , Toppari, J. , Veijola, R. & et al. (2019). Persistent Alterations in Plasma Lipid Profiles Before Introduction of Gluten in the Diet Associated With Progression to Celiac Disease.  Clinical and Translational Gastroenterology, 10. [BibTeX]
• Djekic, D. , Pinto, R. , Repsilber, D. , Hyötyläinen, T. & Henein, M. (2019). Serum untargeted lipidomic profiling reveals dysfunction of phospholipid metabolism in subclinical coronary artery disease.  Vascular Health and Risk Management, 15, 123-135. [BibTeX]
• Ahonen, L. , Jäntti, S. , Suvitaival, T. , Theilade, S. , Risz, C. , Kostiainen, R. , Rossing, P. , Oresic, M. & et al. (2019). Targeted Clinical Metabolite Profiling Platform for the Stratification of Diabetic Patients.  Metabolites, 9 (9). [BibTeX]
• Liu, G. , Hyötyläinen, T. & Falandysz, J. (2019). Toxicology and Environmental Characteristics of emerging pollutants.  Ecotoxicology and Environmental Safety, 181, 264-264. [BibTeX]
• Pedersen, H. K. , Forslund, S. K. , Gudmundsdottir, V. , Østergaard Petersen, A. , Hildebrand, F. , Hyötyläinen, T. , Nielsen, T. , Hansen, T. & et al. (2018). A computational framework to integrate high-throughput '-omics' datasets for the identification of potential mechanistic links.  Nature Protocols, 13 (12), 2781-2800. [BibTeX]
• Lamichhane, S. , Ahonen, L. , Dyrlund, T. S. , Siljander, H. , Hyöty, H. , Ilonen, J. , Toppari, J. , Veijola, R. & et al. (2018). A longitudinal plasma lipidomics dataset from children who developed islet autoimmunity and type 1 diabetes.  Scientific Data, 5. [BibTeX]
• Lamichhane, S. , Ahonen, L. , Dyrlund, T. S. , Kemppainen, E. , Siljander, H. , Hyöty, H. , Ilonen, J. , Toppari, J. & et al. (2018). Dynamics of Plasma Lipidome in Progression to Islet Autoimmunity and Type 1 Diabetes - Type 1 Diabetes Prediction and Prevention Study (DIPP).  Scientific Reports, 8. [BibTeX]
• Suvitaival, T. , Bondia-Pons, I. , Yetukuri, L. , Pöhö, P. , Nolan, J. J. , Hyötyläinen, T. , Kuusisto, J. & Orešič, M. (2018). Lipidome as a predictive tool in progression to type 2 diabetes in Finnish men.  Metabolism: Clinical and Experimental, 78 (January), 1-12. [BibTeX]
• Luukkonen, P. K. , Sädevirta, S. , Zhou, Y. , Kayser, B. , Ali, A. , Ahonen, L. , Lallukka, S. , Pelloux, V. & et al. (2018). Saturated Fat Is More Metabolically Harmful for the Human Liver Than Unsaturated Fat or Simple Sugars.  Diabetes Care, 41 (8), 1732-1739. [BibTeX]
• Dickens, A. M. , Posti, J. P. , Takala, R. S. , Ala-Seppälä, H. M. , Mattila, I. , Coles, J. C. , Frantzén, J. , Hutchinson, P. J. & et al. (2018). Serum Metabolites Associated with Computed TomographyFindings after Traumatic Brain Injury.  Journal of Neurotrauma, 35 (22), 2673-2683. [BibTeX]
• Grip, T. , Dyrlund, T. S. , Ahonen, L. , Domellöf, M. , Hernell, O. , Hyötyläinen, T. , Knip, M. , Lönnerdal, B. & et al. (2018). Serum, plasma and erythrocyte membrane lipidomes in infants fed formula supplemented with bovine milk fat globule membranes.  Pediatric Research, 84 (5), 726-732. [BibTeX]
• Oresic, M. , Anderson, G. , Mattila, I. , Manoucheri, M. , Soininen, H. , Hyötyläinen, T. & Basignani, C. (2018). Targeted Serum Metabolite Profiling Identifies Metabolic Signatures in Patients with Alzheimer's Disease, Normal Pressure Hydrocephalus and Brain Tumor.  Frontiers in Neuroscience, 11. [BibTeX]
• Bowden, J. A. , Hyötyläinen, T. , Oresic, M. & Zhou, S. (2017). Harmonizing Lipidomics: NIST Interlaboratory Comparison Exercise for Lipidomics using Standard Reference Material 1950 Metabolites in Frozen Human Plasma.  Journal of Lipid Research, 58 (12), 2275-2288. [BibTeX]
• O'Gorman, A. , Suvitaival, T. , Ahonen, L. , Cannon, M. , Zammit, S. , Lewis, G. , Roche, H. M. , Mattila, I. & et al. (2017). Identification of a plasma signature of psychotic disorder in children and adolescents from the Avon Longitudinal Study of Parents and Children (ALSPAC) cohort.  Translational Psychiatry, 7. [BibTeX]
• Luukkonen, P. K. , Zhou, Y. , Haridas, N. P. A. , Dwivedi, O. P. , Hyötyläinen, T. , Ali, A. , Juuti, A. , Leivonen, M. & et al. (2017). Impaired hepatic lipid synthesis from polyunsaturated fatty acids in TM6SF2 E167K variant carriers with NAFLD.  Journal of Hepatology, 67 (1), 128-136. [BibTeX]
• Hyötyläinen, T. , Ahonen, L. , Pöhö, P. & Oresic, M. (2017). Lipidomics in biomedical research-practical considerations.  Biochimica et Biophysica Acta, 1862 (8), 800-803. [BibTeX]
• Jørgenrud, B. , Stene, L. C. , Tapia, G. , Bøås, H. , Pepaj, M. , Berg, J. P. , Thorsby, P. M. , Orešič, M. & et al. (2017). Longitudinal plasma metabolic profiles, infant feeding, and islet autoimmunity in the MIDIA study.  Pediatric Diabetes, 18 (2), 111-119. [BibTeX]
• Lankinen, M. , Schwab, U. , Kolehmainen, M. , Paananen, J. , Nygren, H. , Seppänen-Laakso, T. , Poutanen, K. , Hyötyläinen, T. & et al. (2016). A Healthy Nordic Diet Alters the Plasma Lipidomic Profile in Adults with Features of Metabolic Syndrome in a Multicenter Randomized Dietary Intervention.  Journal of Nutrition, 146 (4), 662-672. [BibTeX]
• Hyötyläinen, T. , Jerby, L. , Petäjä, E. M. , Mattila, I. , Jäntti, S. , Auvinen, P. , Gastaldelli, A. , Yki-Järvinen, H. & et al. (2016). Genome-scale study reveals reduced metabolic adaptability in patients with non-alcoholic fatty liver disease.  Nature Communications, 7. [BibTeX]
• Luukkonen, P. K. , Zhou, Y. , Sädevirta, S. , Leivonen, M. , Arola, J. , Oresic, M. , Hyötyläinen, T. & Yki-Järvinen, H. (2016). Hepatic ceramides dissociate steatosis and insulin resistance in patients with non-alcoholic fatty liver disease.  Journal of Hepatology, 64 (5), 1167-1175. [BibTeX]
• Pedersen, H. K. , Gudmundsdottir, V. , Nielsen, H. B. , Hyötyläinen, T. , Nielsen, T. , Jensen, B. A. H. , Forslund, K. , Hildebrand, F. & et al. (2016). Human gut microbes impact host serum metabolome and insulin sensitivity.  Nature, 535 (7612), 376-381. [BibTeX]
• Oresic, M. , Posti, J. P. , Kamstrup-Nielsen, M. H. , Takala, R. S. K. , Lingsma, H. F. , Mattila, I. , Jäntti, S. , Katila, A. J. & et al. (2016). Human Serum Metabolites Associate With Severity and Patient Outcomes in Traumatic Brain Injury.  EBioMedicine, 12, 118-126. [BibTeX]
• Kurko, J. , Tringham, M. , Tanner, L. , Näntö-Salonen, K. , Vähä-Mäkilä, M. , Nygren, H. , Pöhö, P. , Lietzen, N. & et al. (2016). Imbalance of plasma amino acids, metabolites and lipids in patients with lysinuric protein intolerance (LPI).  Metabolism: Clinical and Experimental, 65 (9), 1361-1375. [BibTeX]
• Zhou, Y. , Oresic, M. , Leivonen, M. , Gopalacharyulu, P. , Hyysalo, J. , Arola, J. , Verrijken, A. , Francque, S. & et al. (2016). Noninvasive Detection of Nonalcoholic Steatohepatitis Using Clinical Markers and Circulating Levels of Lipids and Metabolites.  Clinical Gastroenterology and Hepatology, 14 (10), 1463-1472.e6. [BibTeX]
• Aho, V. , Ollila, H. M. , Kronholm, E. , Bondia-Pons, I. , Soininen, P. , Kangas, A. J. , Hilvo, M. , Seppälä, I. & et al. (2016). Prolonged sleep restriction induces changes in pathways involved in cholesterol metabolism and inflammatory responses.  Scientific Reports, 6. [BibTeX]
• Suvitaival, T. , Mantere, O. , Kieseppä, T. , Mattila, I. , Pöhö, P. , Hyötyläinen, T. , Suvisaari, J. & Orešič, M. (2016). Serum metabolite profile associates with the development of metabolic co-morbidities in first-episode psychosis.  Translational Psychiatry, 6 (11). [BibTeX]
• Luukkonen, P. K. , Zhou, Y. , Hyötyläinen, T. , Leivonen, M. , Arola, J. , Orho-Melander, M. , Oresic, M. & Yki-Järvinen, H. (2016). The MBOAT7 variant rs641738 alters hepatic phosphatidylinositols and increases severity of non-alcoholic fatty liver disease in humans.  Journal of Hepatology, 65 (6), 1263-1265. [BibTeX]
• Hyötyläinen, T. & Orešič, M. (2015). Analytical Lipidomics in Metabolic and Clinical Research.  Trends in endocrinology and metabolism, 26 (12), 671-673. [BibTeX]
• Zhou, Y. , Llauradó, G. , Oresic, M. , Hyötyläinen, T. , Orho-Melander, M. & Yki-Järvinen, H. (2015). Circulating triacylglycerol signatures and insulin sensitivity in NAFLD associated with the E167K variant in TM6SF2.  Journal of Hepatology, 62 (3), 657-663. [BibTeX]
• Parshintsev, J. & Hyötyläinen, T. (2015). Methods for characterization of organic compounds in atmospheric aerosol particles.  Analytical and Bioanalytical Chemistry, 407 (20), 5877-5897. [BibTeX]
• Polinati, P. P. , Ilmarinen, T. , Trokovic, R. , Hyötyläinen, T. , Otonkoski, T. , Suomalainen, A. , Skottman, H. & Tynitiina, T. (2015). Patient-specific induced pluripotent stem cell-derived RPE cells: Understanding the pathogenesis of retinopathy in long-chain 3-hydroxyacyl-CoA dehydrogenase deiciency.  Investigative Ophthalmology and Visual Science, 56 (5), 3371-3382. [BibTeX]
• Foerster, J. , Hyötyläinen, T. , Oresic, M. , Nygren, H. & Boeing, H. (2015). Serum Lipid and Serum Metabolite Components in relation to anthropometric parameters in EPIC-Potsdam participants.  Metabolism: Clinical and Experimental, 64 (10), 1348-58. [BibTeX]
• Kostic, A. D. , Gevers, D. , Siljander, H. , Vatanen, T. , Hyötyläinen, T. , Hämäläinen, A. , Peet, A. , Tillmann, V. & et al. (2015). The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes.  Cell Host and Microbe, 17 (2), 260-273. [BibTeX]
• Hukkanen, J. , Puurunen, J. , Hyötyläinen, T. , Savolainen, M. J. , Ruokonen, A. , Morin-Papunen, L. , Oresic, M. , Piltonen, T. & et al. (2015). The effect of atorvastatin treatment on serum oxysterol concentrations and cytochrome P450 3A4 activity.  British Journal of Clinical Pharmacology, 80 (3), 473-479. [BibTeX]
• Jørgenrud, B. , Jäntti, S. , Mattila, I. , Pöhö, P. , Rønningen, K. S. , Yki-Järvinen, H. , Oresic, M. & Hyötyläinen, T. (2015). The influence of sample collection methodology and sample preprocessing on the blood metabolic profile..  Bioanalysis, 7 (8), 991-1006. [BibTeX]
• Jørgenrud, B. , Jalanko, M. , Heliö, T. , Jääskeläinen, P. , Laine, M. , Hilvo, M. , Nieminen, M. S. , Laakso, M. & et al. (2015). The Metabolome in Finnish Carriers of the MYBPC3-Q1061X Mutation for Hypertrophic Cardiomyopathy.  PLOS ONE, 10 (8). [BibTeX]
• Naukkarinen, J. , Heinonen, S. , Hakkarainen, A. , Lundbom, J. , Vuolteenaho, K. , Saarinen, L. , Hautaniemi, S. , Rodriguez, A. & et al. (2014). Characterising metabolically healthy obesity in weight-discordant monozygotic twins.  Diabetologia, 57 (1), 167-176. [BibTeX]
• Hyysalo, J. , Gopalacharyulu, P. , Bian, H. , Hyötyläinen, T. , Leivonen, M. , Jaser, N. , Juuti, A. , Honka, M. & et al. (2014). Circulating triacylglycerol signatures in nonalcoholic fatty liver disease associated with the I148M variant in PNPLA3 and with obesity.  Diabetes, 63 (1), 312-322. [BibTeX]
• Snowden, S. G. , Grapov, D. , Settergren, M. , D'Alexandri, F. L. , Haeggström, J. Z. , Fiehn, O. , Hyötyläinen, T. , Pedersen, T. L. & et al. (2014). High-dose simvastatin exhibits enhanced lipid-lowering effects relative to simvastatin/ezetimibe combination therapy.  Circulation: Cardiovascular Genetics, 7 (6), 955-964. [BibTeX]
• Bondia-Pons, I. , Pöhö, P. , Bozzetto, L. , Vetrani, C. , Patti, L. , Aura, A. , Annuzzi, G. , Hyötyläinen, T. & et al. (2014). Isoenergetic diets differing in their n-3 fatty acid and polyphenol content reflect different plasma and HDL-fraction lipidomic profiles in subjects at high cardiovascular risk.  Molecular Nutrition & Food Research, 58 (9), 1873-1882. [BibTeX]
• Bondia-Pons, I. , Maukonen, J. , Mattila, I. , Rissanen, A. , Saarela, M. , Kaprio, J. , Hakkarainen, A. , Lundbom, J. & et al. (2014). Metabolome and fecal microbiota in monozygotic twin pairs discordant for weight: a Big Mac challenge.  The FASEB Journal, 28 (9), 4169-4179. [BibTeX]
• Hilvo, M. , Gade, S. , Hyötyläinen, T. , Nekljudova, V. , Seppänen-Laakso, T. , Sysi-Aho, M. , Untch, M. , Huober, J. & et al. (2014). Monounsaturated fatty acids in serum triacylglycerols are associated with response to neoadjuvant chemotherapy in breast cancer patients.  International Journal of Cancer, 134 (7), 1725-1733. [BibTeX]
• Vetrani, C. , Rivellese, A. A. , Annuzzi, G. , Mattila, I. , Meudec, E. , Hyötyläinen, T. , Oresic, M. & Aura, A. -. (2014). Phenolic metabolites as compliance biomarker for polyphenol intake in a randomized controlled human intervention.  Food Research International, 63 (B), 233-238. [BibTeX]
• Jäntti, S. E. , Kivilompolo, M. , Öhrnberg, L. , Pietiläinen, K. H. , Nygren, H. , Oresic, M. & Hyötyläinen, T. (2014). Quantitative profiling of bile acids in blood, adipose tissue, intestine, and gall bladder samples using ultra high performance liquid chromatography-tandem mass spectrometry.  Analytical and Bioanalytical Chemistry, 406 (30), 7799-7815. [BibTeX]
• Moravcová, D. , Haapala, M. , Planeta, J. , Hyötyläinen, T. , Kostiainen, R. & Wiedmer, S. K. (2014). Separation of nucleobases, nucleosides, and nucleotides using two zwitterionic silica-based monolithic capillary columns coupled with tandem mass spectrometry.  Journal of Chromatography A, 1373, 90-96. [BibTeX]
• Greiner, T. U. , Hyötyläinen, T. , Knip, M. , Bäckhed, F. & Oresic, M. (2014). The gut microbiota modulates glycaemic control and serum metabolite profiles in non-obese diabetic mice.  PLOS ONE, 9 (11). [BibTeX]
• Nygren, H. , Pöhö, P. , Seppänen-Laakso, T. , Lahtinen, U. , Oresic, M. & Hyötyläinen, T. (2014). Ultrahigh-performance liquid chromatography-mass spectrometry in Lipidomics.  LC GC North America, 32 (4), 286-293. [BibTeX]
• Hartonen, M. , Mattila, I. , Ruskeepää, A. , Oresic, M. & Hyötyläinen, T. (2013). Characterization of cerebrospinal fluid by comprehensive two-dimensional gas chromatography coupled to time-of-flight mass spectrometry.  Journal of Chromatography A, 1293, 142-149. [BibTeX]
• Aura, A. , Mattila, I. , Hyötyläinen, T. , Gopalacharyulu, P. , Cheynier, V. , Souquet, J. , Bes, M. , Le Bourvellec, C. & et al. (2013). Characterization of microbial metabolism of Syrah grape products in an in vitro colon model using targeted and non-targeted analytical approaches.  European Journal of Nutrition, 52 (2), 833-846. [BibTeX]
• Oresic, M. , Gopalacharyulu, P. , Mykkänen, J. , Lietzen, N. , Mäkinen, M. , Nygren, H. , Simell, S. , Simell, V. & et al. (2013). Cord serum lipidome in prediction of islet autoimmunity and type 1 diabetes.  Diabetes, 62 (9), 3268-3274. [BibTeX]
• La Torre, D. , Seppänen-Laakso, T. , Larsson, H. E. , Hyötyläinen, T. , Ivarsson, S. A. , Lernmark, Å. & Oresic, M. (2013). Decreased cord-blood phospholipids in young age-at-onset type 1 diabetes.  Diabetes, 62 (11), 3951-3956. [BibTeX]
• Laurila, P. , Surakka, I. , Sarin, A. , Yetukuri, L. , Hyötyläinen, T. , Söderlund, S. , Naukkarinen, J. , Tang, J. & et al. (2013). Genomic, transcriptomic, and lipidomic profiling highlights the role of inflammation in individuals with low high-density lipoprotein cholesterol.  Arteriosclerosis, Thrombosis and Vascular Biology, 33 (4), 847-857. [BibTeX]
• Sayin, S. I. , Wahlström, A. , Felin, J. , Jäntti, S. , Marschall, H. , Bamberg, K. , Angelin, B. , Hyötyläinen, T. & et al. (2013). Gut microbiota regulates bile acid metabolism by reducing the levels of tauro-beta-muricholic acid, a naturally occurring FXR antagonist.  Cell Metabolism, 17 (2), 225-235. [BibTeX]
• Havula, E. , Teesalu, M. , Hyötyläinen, T. , Seppälä, H. , Hasygar, K. , Auvinen, P. , Oresic, M. , Sandmann, T. & et al. (2013). Mondo/ChREBP-Mlx-regulated transcriptional network is essential for dietary sugar tolerance in Drosophila.  PLOS Genetics, 9 (4). [BibTeX]
• Orešič, M. , Hyötyläinen, T. , Kotronen, A. , Gopalacharyulu, P. , Nygren, H. , Arola, J. , Castillo, S. , Mattila, I. & et al. (2013). Prediction of non-alcoholic fatty-liver disease and liver fat content by serum molecular lipids.  Diabetologia, 56 (10), 2266-2274. [BibTeX]
• Kivilompolo, M. , Öhrnberg, L. , Oresic, M. & Hyötyläinen, T. (2013). Rapid quantitative analysis of carnitine and acylcarnitines by ultra-high performance-hydrophilic interaction liquid chromatography-tandem mass spectrometry.  Journal of Chromatography A, 1292, 189-194. [BibTeX]
• Jäntti, S. E. , Hartonen, M. , Hilvo, M. , Nygren, H. , Hyötyläinen, T. , Ketola, R. A. & Kostiainen, R. (2013). Steroid and steroid glucuronide profiles in urine during pregnancy determined by liquid chromatography-electrospray ionization-tandem mass spectrometry.  Analytica Chimica Acta, 802, 56-66. [BibTeX]
• Nygren, H. , Pöhö, P. , Seppänen-Laakso, T. , Lahtinen, U. , Oresic, M. & Hyötyläinen, T. (2013). Ultrahigh-performance liquid chromatography-mass spectrometry in lipidomics.  LC GC Europe, 26 (3), 142-148. [BibTeX]
• Wiedmer, S. K. , Robciuc, A. , Kronholm, J. , Holopainen, J. M. & Hyötyläinen, T. (2012). Chromatographic lipid profiling of stress-exposed cells.  Journal of Separation Science, 35 (15), 1845-1853. [BibTeX]
• Ottestad, I. , Hassani, S. , Borge, G. I. , Kohler, A. , Vogt, G. , Hyötyläinen, T. , Oresic, M. , Brønner, K. W. & et al. (2012). Fish oil supplementation alters the plasma lipidomic profile and increases long-chain PUFAs of phospholipids and triglycerides in healthy subjects.  PLOS ONE, 7 (8). [BibTeX]
• Robciuc, A. , Hyötyläinen, T. , Jauhiainen, M. & Holopainen, J. M. (2012). Hyperosmolarity-induced lipid droplet formation depends on ceramide production by neutral sphingomyelinase 2.  Journal of Lipid Research, 53 (11), 2286-2295. [BibTeX]
• Hyötyläinen, T. , Mattila, I. , Wiedmer, S. K. , Koivuniemi, A. , Taskinen, M. , Yki-Järvinen, H. & Oresic, M. (2012). Metabolomic analysis of polar metabolites in lipoprotein fractions identifies lipoprotein-specific metabolic profiles and their association with insulin resistance.  Molecular Biosystems, 8 (10), 2559-2565. [BibTeX]
• Hyötyläinen, T. (2012). Novel methodologies in metabolic profiling with a focus on molecular diagnostic applications.  Expert Review of Molecular Diagnostics, 12 (5), 527-538. [BibTeX]
• Oresic, M. , Seppänen-Laakso, T. , Sun, D. , Tang, J. , Therman, S. , Viehman, R. , Mustonen, U. , van Erp, T. G. & et al. (2012). Phospholipids and insulin resistance in psychosis: A lipidomics study of twin pairs discordant for schizophrenia.  Genome Medicine, 4 (1). [BibTeX]
• Ketola, K. , Hilvo, M. , Hyötyläinen, T. , Vuoristo, A. , Ruskeepää, A. L. , Oresic, M. , Kallioniemi, O. P. & Iljin, K. (2012). Salinomycin inhibits prostate cancer growth and migration via induction of oxidative stress.  British Journal of Cancer, 106 (1), 99-106. [BibTeX]
• Pflueger, M. , Seppänen-Laakso, T. , Suortti, T. , Hyötyläinen, T. , Achenbach, P. , Bonifacio, E. , Oresic, M. & Ziegler, A. (2011). Age- and islet autoimmunity-associated differences in amino acid and lipid metabolites in children at risk for type 1 diabetes.  Diabetes, 60 (11), 2740-2747. [BibTeX]
• Pietiläinen, K. H. , Róg, T. , Seppänen-Laakso, T. , Virtue, S. , Gopalacharyulu, P. , Tang, J. , Rodriguez-Cuenca, S. , Maciejewski, A. & et al. (2011). Association of lipidome remodeling in the adipocyte membrane with acquired obesity in humans.  PLoS biology, 9 (6). [BibTeX]
• Castillo, S. , Mattila, I. , Miettinen, J. , Oresic, M. & Hyötyläinen, T. (2011). Data analysis tool for comprehensive two-dimensional gas chromatography/time-of-flight mass spectrometry.  Analytical Chemistry, 83 (8), 3058-3067. [BibTeX]
• Aura, A. , Mattila, I. , Hyötyläinen, T. , Gopalacharyulu, P. , Bounsaythip, C. , Oresic, M. & Oksman-Caldentey, K. (2011). Drug metabolome of the simvastatin formed by human intestinal microbiota in vitro.  Molecular Biosystems, 7 (2), 437-446. [BibTeX]
• Götz, A. , Tyynismaa, H. , Euro, L. , Ellonen, P. , Hyötyläinen, T. , Ojala, T. , Hämäläinen, R. H. , Tommiska, J. & et al. (2011). Exome sequencing identifies mitochondrial alanyl-tRNA synthetase mutations in infantile mitochondrial cardiomyopathy.  American Journal of Human Genetics, 88 (5), 635-642. [BibTeX]
• Nygren, H. , Seppänen-Laakso, T. , Castillo, S. , Hyötyläinen, T. & Oresic, M. (2011). Liquid chromatography-mass spectrometry (LC-MS)-based lipidomics for studies of body fluids and tissues.  Methods in Molecular Biology, 708, 247-257. [BibTeX]
• Orešič, M. , Hyötyläinen, T. , Herukka, S. , Sysi-Aho, M. , Mattila, I. , Seppänan-Laakso, T. , Julkunen, V. , Gopalacharyulu, P. V. & et al. (2011). Metabolome in progression to Alzheimer's disease.  Translational Psychiatry, 1. [BibTeX]
• Oresic, M. , Tang, J. , Seppänen-Laakso, T. , Mattila, I. , Saarni, S. E. , Saarni, S. I. , Lönnqvist, J. , Sysi-Aho, M. & et al. (2011). Metabolome in schizophrenia and other psychotic disorders: a general population-based study.  Genome Medicine, 3 (3). [BibTeX]
• Hilvo, M. , Denkert, C. , Lehtinen, L. , Müller, B. , Brockmöller, S. , Seppänen-Laakso, T. , Budczies, J. , Bucher, E. & et al. (2011). Novel theranostic opportunities offered by characterization of altered membrane lipid metabolism in breast cancer progression.  Cancer Research, 71 (9), 3236-45. [BibTeX]
• Pól, J. , Vidová, V. , Hyötyläinen, T. , Volný, M. , Novák, P. , Strohalm, M. , Kostiainen, R. , Havlíček, V. & et al. (2011). Spatial distribution of glycerophospholipids in the ocular lens.  PLOS ONE, 6 (4). [BibTeX]
• Hyötyläinen, T. (2010). Analytical methodologies utilized in the search for chronic disease biomarkers.  Bioanalysis, 2 (5), 919-923. [BibTeX]
• Helle, A. , Hirsjärvi, S. , Peltonen, L. , Hirvonen, J. , Wiedmer, S. K. & Hyötyläinen, T. (2010). Novel, dynamic on-line analytical separation system for dissolution of drugs from poly(lactic acid) nanoparticles.  Journal of Pharmaceutical and Biomedical Analysis, 51 (1), 125-130. [BibTeX]
• Parshintsev, J. , Hyötyläinen, T. , Hartonen, K. , Kulmala, M. & Riekkola, M. -. (2010). Solid-phase extraction of organic compounds in atmospheric aerosol particles collected with the particle-into-liquid sampler and analysis by liquid chromatography-mass spectrometry.  Talanta: The International Journal of Pure and Applied Analytical Chemistry, 80 (3), 1170-1176. [BibTeX]

Articles, reviews/surveys

• Castro Alves, V. , Nguyen, A. H. , Barbosa, J. M. G. , Oresic, M. & Hyötyläinen, T. (2025). Liquid and gas-chromatography-mass spectrometry methods for exposome analysis.  Journal of Chromatography A, 1744. [BibTeX]
• Niarchos, G. , Alygizakis, N. , Carere, M. , Dulio, V. , Engwall, M. , Hyötyläinen, T. , Kallenborn, R. , Karakitsios, S. & et al. (2024). Pioneering an effect-based early warning system for hazardous chemicals in the environment.  TrAC. Trends in analytical chemistry, 180. [BibTeX]
• Heuckeroth, S. , Damiani, T. , Smirnov, A. , Mokshyna, O. , Brungs, C. , Korf, A. , Smith, J. D. , Stincone, P. & et al. (2024). Reproducible mass spectrometry data processing and compound annotation in MZmine 3.  Nature Protocols, 19 (9), 2597-2641. [BibTeX]
• Salihovic, S. , Lamichane, S. , Hyötyläinen, T. & Oresic, M. (2023). Recent advances towards mass spectrometry-based clinical lipidomics.  Current opinion in chemical biology, 76. [BibTeX]
• Castro Alves, V. , Oresic, M. & Hyötyläinen, T. (2022). Lipidomics in nutrition research.  Current opinion in clinical nutrition and metabolic care, 25 (5), 311-318. [BibTeX]
• Lamichhane, S. , Sen, P. , Alves, M. A. , Ribeiro, H. C. , Raunioniemi, P. , Hyötyläinen, T. & Oresic, M. (2021). Linking Gut Microbiome and Lipid Metabolism: Moving beyond Associations.  Metabolites, 11 (1). [BibTeX]
• Masoodi, M. , Gastaldelli, A. , Hyötyläinen, T. , Arretxe, E. , Alonso, C. , Gaggini, M. , Brosnan, J. , Anstee, Q. M. & et al. (2021). Metabolomics and lipidomics in NAFLD: biomarkers and non-invasive diagnostic tests.  Nature Reviews. Gastroenterology & Hepatology, 18 (12), 835-856. [BibTeX]
• Alves, M. A. , Lamichhane, S. , Dickens, A. , McGlinchey, A. J. , Ribeiro, H. C. , Sen, P. , Wei, F. , Hyötyläinen, T. & et al. (2021). Systems biology approaches to study lipidomes in health and disease.  Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids, 1866 (2). [BibTeX]
• Oresic, M. , McGlinchey, A. J. , Wheelock, C. E. & Hyötyläinen, T. (2020). Metabolic Signatures of the Exposome-Quantifying the Impact of Exposure to Environmental Chemicals on Human Health.  Metabolites, 10 (11). [BibTeX]
• Fang, W. , Santosh, L. , Oresic, M. & Hyötyläinen, T. (2019). Lipidomes in health and disease: Analytical strategies and considerations.  TrAC. Trends in analytical chemistry, 120. [BibTeX]
• Frank, E. , Maier, D. , Pajula, J. , Suvitaival, T. , Borgan, F. , Butz-Ostendorf, M. , Fischer, A. , Hietala, J. & et al. (2018). Platform for systems medicine research and diagnostic applications in psychotic disorders - The METSY project.  European psychiatry, 50, 40-46. [BibTeX]
• Posti, J. P. , Dickens, A. M. , Orešič, M. , Hyötyläinen, T. & Tenovuo, O. (2017). Metabolomics Profiling As a Diagnostic Tool in Severe Traumatic Brain injury.  Frontiers in Neurology, 8. [BibTeX]
• Hyötyläinen, T. & Orešič, M. (2016). Bioanalytical techniques in nontargeted clinical lipidomics.  Bioanalysis, 8 (4), 351-364. [BibTeX]
• Hyötyläinen, T. & Oresic, M. (2015). Optimizing the lipidomics workflow for clinical studies: practical considerations.  Analytical and Bioanalytical Chemistry, 407 (17), 4973-4993. [BibTeX]
• Hyötyläinen, T. & Oresic, M. (2014). Systems biology strategies to study lipidomes in health and disease.  Progress in lipid research, 55 (1), 43-60. [BibTeX]
• Robciuc, A. , Hyötyläinen, T. , Jauhiainen, M. & Holopainen, J. M. (2013). Ceramides in the pathophysiology of the anterior segment of the eye.  Current Eye Research, 38 (10), 1006-1016. [BibTeX]
• Hyötyläinen, T. , Bondia-Pons, I. & Oresic, M. (2013). Lipidomics in nutrition and food research.  Molecular Nutrition & Food Research, 57 (8), 1306-1318. [BibTeX]

Chapters in books

• Lamichhane, S. , Sen, P. , Dickens, A. M. , Hyötyläinen, T. & Orešič, M. (2018). An Overview of Metabolomics Data Analysis: Current Tools and Future Perspectives. In: Joaquim Jaumot; Carmen Bedia; Romà Tauler, Data Analysis for Omic Sciences: Methods and Applications (pp. 387-413). . Elsevier. [BibTeX]

Conference papers

• Qadri, S. F. , Hodson, L. , Porthan, K. , Juuti, A. , Penttilä, A. K. , Hyötyläinen, T. , Oresic, M. , Johnson, E. & et al. (2025). HSD17B13 loss-of-function protects against steatosis-induced hepatic phosphatidylcholine depletion by promoting polyunsaturated fatty acid retention in humans in vivo and in experimental models. In:  Journal of Hepatology. Paper presented at European Association for the Study of the Liver Congress (EASL 2025), Amsterdam, Netherlands, May 7-10, 2025. Elsevier. [BibTeX]
• Gupta, S. , Jamialahmadi, O. , Mancina, R. , Hyötyläinen, T. , Romeo, S. & Oresic, M. (2025). Metabolomic and transcriptomic insights into gender-specific PFAS effects on liver disease. In:  Journal of Hepatology. Paper presented at European Association for the Study of the Liver Congress (EASL 2025), Amsterdam, Netherlands, May 7-10, 2025. (pp. S112-S112). Elsevier. [BibTeX]
• Moseley, M. A. , Fiehn, O. , Dorrestein, P. , Hyötyläinen, T. , Oresic, M. , Wishart, D. , Zhao, N. , Kaddurah-Daouk, R. F. & et al. (2024). Biomarkers. In:  Alzheimer's & Dementia Journal of the Alzheimer's Association. Sage Publications. [BibTeX]
• Sabatini, S. , Sen, P. , Carli, F. , Pezzica, S. , Lembo, E. , Rosso, C. , Daly, A. , Cockel, S. & et al. (2024). Hepatic glucose production is increased in MASH with significant fibrosis even in absence of diabetes. In:  Diabetologia. Paper presented at 60th Annual Meeting of the European-Association-for-the-Study-of-Diabetes (EASD 2024), Madrid, Spain, September 9-13, 2024. (pp. S121-S122). Springer. [BibTeX]
• Salihovic, S. , Nyström, N. , Mathisen, C. B. , Andersen, S. , Olbjørn, C. , Perminow, G. , Opheim, R. , Detlie, T. E. & et al. (2023). Identification and validation of a lipidomic signature as a novel diagnostic biomarker of paediatric Inflammatory Bowel Disease. In:  Journal of Crohn's & Colitis. Oxford University Press. [BibTeX]
• Qadri, S. , Vartiainen, E. , Ahlholm, N. , Porthan, K. , Juuti, A. , Sammalkorpi, H. , Penttilä, A. , Arola, J. & et al. (2022). Hepatic insulin resistance is the basis of bile acid dysmetabolism in non-alcoholic fatty liver disease. In:  Journal of Hepatology. Paper presented at The International Liver Congress 2022, London, UK, June 22-26, 2022. (pp. S694-S695). Elsevier. [BibTeX]
• Qadri, S. , Blom, S. , Pitkänen, K. , Ahlholm, N. , Porthan, K. , Luukkonen, P. K. , Juuti, A. , Sammalkorpi, H. & et al. (2022). Heterogeneity of phosphatidylcholine metabolism in nonalcoholic fatty liver disease. In:  Journal of Hepatology. Paper presented at The International Liver Congress 2022, London, UK, June 22-26, 2022. (pp. S111-S111). Elsevier. [BibTeX]
• Oresic, M. , Sen, P. , Quadri, S. , Luukkonen, P. , Ragnarsdottir, O. , Jäntti, S. , Juuti, A. , Arola, J. & et al. (2021). Exposure to environmental contaminants is associated with sex-specific disturbances of hepatic lipid metabolism in non-alcoholic fatty liver disease. In:  Journal of Hepatology. Paper presented at The International Liver Congress, (Digital congress), June 23–26, 2021. (pp. S605-S606). Elsevier. [BibTeX]
• Sen, P. , Govaere, O. , Sinioja, T. , McGlinchey, A. J. , Geng, D. , Ratziu, V. , Bugianesi, E. , Schattenberg, J. & et al. (2021). Genome-scale metabolic modeling of human hepatocytes reveals dysregulation of glycosphingolipid pathways in progressive non-alcoholic fatty liver disease. In:  Journal of Hepatology. Paper presented at The International Liver Congress, (Digital congress), June 23–26, 2021. (pp. S256-S256). Elsevier. [BibTeX]
• Sen, P. , Andrabi, S. B. A. , Buchacher, T. , Khan, M. M. , Ullah, U. , Lindeman, T. M. , Alves, M. A. , Hinkkanen, V. & et al. (2021). Quantitative analysis of human CD4+T-cell differentiation reveals subset-specific regulation of glycosphingolipid pathways. In:  European Journal of Immunology. Paper presented at 6th European Congress of Immunology, (Virtual meeting), September 1–4, 2021. (pp. 237-237). John Wiley & Sons. [BibTeX]
• Ha, V. T. , Lainscek, D. , Gesslbauer, B. , Jarc, E. , Hyötyläinen, T. , Ilc, N. , Lakota, K. , Tomsic, M. & et al. (2021). Synergy between 15-lipoxygenase and secreted PLA2 promotes inflammation by formation of TLR4 agonists from extracellular vesicles. In:  FEBS Open Bio. Paper presented at 45th FEBS Congress, Molecules of Life: Towards New Horizons, Ljubljana, Slovenia, July 3–8, 2021. (pp. 480-480). John Wiley & Sons. [BibTeX]
• McGlinchey, A. J. , Geng, D. , Govaere, O. , Ratziu, V. , Bugianesi, E. , Schattenberg, J. M. , Daley, A. , Hyötyläinen, T. & et al. (2021). The Metabolomics of Non-Alcoholic Fatty Liver Disease: Of Networks and Biomarkers. In:  Journal of Hepatology. Paper presented at The International Liver Congress, (Digital congress), June 23–26, 2021. (pp. S579-S580). Elsevier. [BibTeX]
• Sen, P. , Govaere, O. , McGlinchey, A. J. , Ratziu, V. , Bugianesi, E. , Schattenberg, J. M. , Allison, M. , Cockell, S. & et al. (2020). Metabolism of human liver on a genome scale in non-alcoholic fatty liver disease. In:  Journal of Hepatology. Paper presented at The Digital International Liver Congress (EASL 2020), August 27-29, 2020. (pp. S671-S672). Elsevier. [BibTeX]
• McGlinchey, A. J. , Geng, D. , Govaere, O. , Ratziu, V. , Bugianesi, E. , Schattenberg, J. M. , Daly, A. K. , Hyötyläinen, T. & et al. (2020). Metabolomics approaches to identify biomarkers of nonalcoholic fatty liver disease. In:  Journal of Hepatology. Paper presented at The Digital International Liver Congress (EASL 2020), August 27-29, 2020. (pp. S438-S438). Elsevier. [BibTeX]
• Fart, F. , Salihovic, S. , McGlinchey, A. J. , Oresic, M. , Halfvarson, J. , Hyötyläinen, T. & Schoultz, I. (2020). Per- and polyfluoroalkyl substances (PFAS) are significantly increased in patients with late-onset of ulcerative colitis. In:  Journal of Crohn's & Colitis. Oxford University Press. [BibTeX]
• Posti, J. P. , Dickens, A. , Takala, R. S. , Ala-Seppälä, H. , Mattila, I. , Coles, J. P. , Frantzén, J. , Hutchinson, P. J. & et al. (2018). SERUM METABOLITES ASSOCIATE WITH HEAD COMPUTED TOMOGRAPHY FINDINGS FOLLOWING TRAUMATIC BRAIN INJURY. In:  Journal of Neurotrauma. Paper presented at 3rd Joint Symposium of the International-and-National-Neurotrauma-Societies-and-AANS/CNS-Section on Neurotrauma and Critical Care, Toronto, Canada, August 11-16, 2018. (pp. A67-A67). Mary Ann Liebert. [BibTeX]

Manuscripts

• Lamichhane, S. , Dickens, A. M. , Buchacher, T. , Lou, E. T. , Charron-Lamoureux, V. , Kattelus, R. , Karmacharya, P. , Pinto da Silva, L. & et al. Trajectories of microbiome-derived bile acids in early life : nsights into the progression to islet autoimmunity. [BibTeX]
• Nilén, G. , Sunder, S. , Hyötyläinen, T. , Scherbak, N. & Keiter, S. A binary, ternary, and quaternary mixture of PFOS, B[a]P, PCB126, and Arsenic alters behavior, gene expression, and lipid content in zebrafish larvae (Danio rerio). [BibTeX]
• Blanc, M. , Alfonso, S. , Bégout, M. , Barrachina, C. , Hyötyläinen, T. , Keiter, S. & Cousin, X. An environmentally relevant mixture of polychlorinated biphenyls (PCBs) and polybrominated diphenylethers (PBDEs) disrupts mitochondrial function, lipid metabolism and neurotransmission in exposed zebrafish and their unexposed F2 offspring. [BibTeX]
• Latif Ali, M. , Ferrieres, L. , Hyötyläinen, T. & Jass, J. Biocide-resistant Pseudomonas oleovorans isolated from water-based coatings used in construction. [BibTeX]
• Holster, S. , Repsilber, D. , Geng, D. , Hyötyläinen, T. , Salonen, A. , Lindqvist, C. M. , Rajan, S. K. , De Vos, W. M. & et al. Correlations between microbiota and metabolites after faecal microbiota transfer in irritable bowel syndrome. [BibTeX]
• Hylén, U. , Särndahl, E. , Bejerot, S. , Humble, M. B. , Hyötyläinen, T. , Eklund, D. & Salihovic, S. Elevated plasma levels of polyamines and kynurenines in individuals with psychiatric disorders. [BibTeX]
• Latif Ali, M. & Hyötyläinen, T. Exploring Biocide-Free Strategies and Testing Methods in Coating Material Production Companies. [BibTeX]
• Holster, S. , Repsilber, D. , Geng, D. , Hyötyläinen, T. , Lindqvist, C. M. , de Vos, W. , Brummer, R. J. & König, J. Faecal microbiota transfer in irritable bowel syndrome results inaltered correlations between the gut microbiota and its metabolites. [BibTeX]
• Latif Ali, M. , Ferrieres, L. , Hyötyläinen, T. & Jass, J. Genomic characterization of biocide-resistant Pseudomonas oleovorans isolated from construction material. [BibTeX]
• Latif Ali, M. & Hyötyläinen, T. How Biocide-Free Coating Materials Can Improve Indoor Air Quality. [BibTeX]
• Hylén, U. , Särndahl, E. , Bejerot, S. , Humble, M. B. , Hyötyläinen, T. & Salihovic, S. Individuals with severe psychiatric disorders display altered pattern of plasma immunometabolites. [BibTeX]
• Blanc, M. , Cormier, B. , Hyötyläinen, T. , Krauss, M. , Scherbak, N. , Cousin, X. & Keiter, S. Multi- and transgenerational effects following early-life exposure of zebrafish to permethrin and coumarin 47 : impact on growth, fertility, behavior and lipid metabolism. [BibTeX]