Mårten Lindqvist

Artiklar i tidskrifter

• Pertsinidou, E. , Salomon, B. , Bergemalm, D. , Salihovic, S. , Hedin, C. R. H. , Ling Lundström, M. , Keita, Å. V. , Magnusson, M. K. & et al. (2025). Anti-integrin αvβ6 IgG antibody as a diagnostic and prognostic marker in ulcerative colitis: A cross-sectional and longitudinal study defining a specific disease phenotype.  Journal of Crohn's & Colitis, 19 (5). [BibTeX]
• Salomon, B. , Sudhakar, P. , Bergemalm, D. , Andersson, E. , Grännö, O. , Carlson, M. , Hedin, C. R. H. , Söderholm, J. D. & et al. (2025). Characterization of Inflammatory Bowel Disease Heterogeneity Using Serum Proteomics: A multicenter study.  Journal of Crohn's & Colitis, 19 (5). [BibTeX]
• Asghar, N. , Jaafar, R. , Valko, A. , Merinder, O. , Ljungberg, K. , Lindqvist, C. M. & Johansson, M. (2025). Development of Langat virus infectious clones as a platform for live-attenuated tick-borne encephalitis vaccine.  Npj viruses, 3 (1). [BibTeX]
• Grännö, O. , Bergemalm, D. , Salomon, B. , Lindqvist, C. M. , Hedin, C. R. H. , Carlson, M. , Dannenberg, K. , Andersson, E. & et al. (2025). Preclinical protein signatures of Crohn's disease and ulcerative colitis: A nested case-control study within large population-based cohorts.  Gastroenterology, 168 (4), 741-753. [BibTeX]
• Ling Lundström, M. , Peterson, C. , Hedin, C. R. H. , Bergemalm, D. , Lampinen, M. , Magnusson, M. K. , Keita, Å. V. , Kruse, R. & et al. (2024). Faecal biomarkers for diagnosis and prediction of disease course in treatment-naïve patients with IBD.  Alimentary Pharmacology and Therapeutics, 60 (6), 765-777. [BibTeX]
• Salihovic, S. , Nyström, N. , Mathisen, C. B. , Kruse, R. , Olbjørn, C. , Andersen, S. , Noble, A. J. , Dorn-Rasmussen, M. & et al. (2024). Identification and validation of a blood- based diagnostic lipidomic signature of pediatric inflammatory bowel disease.  Nature Communications, 15 (1). [BibTeX]
• Koskela, A. , Lindqvist, C. M. , Asghar, N. , Johansson, M. , Sundqvist, M. , Mölling, P. & Stenmark, B. (2023). Comparison of SARS-CoV-2 whole genome sequencing using tiled amplicon enrichment and bait hybridization.  Scientific Reports, 13 (1). [BibTeX]
• Lundström, M. L. , Peterson, C. , Lampinen, M. , Hedin, C. R. H. , Keita, Å. V. , Kruse, R. , Magnusson, M. K. , Lindqvist, C. M. & et al. (2023). Fecal Biomarkers of Neutrophil and Eosinophil Origin Reflect the Response to Biological Therapy and Corticosteroids in Patients With Inflammatory Bowel Disease.  Clinical and Translational Gastroenterology, 14 (8). [BibTeX]
• Juzenas, S. , Hübenthal, M. , Lindqvist, C. M. , Kruse, R. , Steiert, T. A. , Degenhardt, F. , Schulte, D. , Nikolaus, S. & et al. (2022). Detailed transcriptional landscape of peripheral blood points to increased neutrophil activation in treatment-naïve inflammatory bowel disease.  Journal of Crohn's & Colitis, 16 (7), 1097-1109. [BibTeX]
• Moraes Holst, L. , Halfvarson, J. , Carlson, M. , Hedin, C. , Kruse, R. , Lindqvist, C. M. , Bergemalm, D. , Almér, S. & et al. (2022). Downregulated Mucosal Autophagy, Alpha Kinase-1 and IL-17 Signaling Pathways in Active and Quiescent Ulcerative Colitis.  Clinical and Experimental Gastroenterology, 15, 129-144. [BibTeX]
• Casado-Bedmar, M. , de-Faria, F. M. , Biskou, O. , Lindqvist, C. M. , Ranasinghe, P. D. , Bednarska, O. , Peterson, C. , Walter, S. A. & et al. (2022). Elevated F-EDN correlates with mucosal eosinophil degranulation in patients with IBS: A possible association with microbiota?.  Journal of Leukocyte Biology, 111 (3), 655-665. [BibTeX]
• Fart, F. , Tingö, L. , Engelheart, S. , Lindqvist, C. M. , Brummer, R. J. , Kihlgren, A. & Schoultz, I. (2022). Gut Health and Its Association with Wellbeing and Nutrient Intake in Community-Dwelling Older Adults.  Gastroenterology Insights, 13 (4), 349-364. [BibTeX]
• de-Faria, F. M. , Casado-Bedmar, M. , Lindqvist, C. M. , Jones, M. P. , Walter, S. A. & Keita, Å. V. (2021). Altered interaction between enteric glial cells and mast cells in the colon of women with irritable bowel syndrome.  Neurogastroenterology and Motility, 33 (11). [BibTeX]
• Holster, S. , Repsilber, D. , Geng, D. , Hyötyläinen, T. , Salonen, A. , Lindqvist, C. M. , Rajan, S. K. , de Vos, W. M. & et al. (2021). Correlations between microbiota and metabolites after faecal microbiota transfer in irritable bowel syndrome.  Beneficial Microbes, 12 (1), 17-30. [BibTeX]
• Juzenas, S. , Lindqvist, C. M. , Ito, G. , Dolshanskaya, Y. , Halfvarson, J. , Franke, A. & Hemmrich-Stanisak, G. (2020). Depletion of erythropoietic miR-486-5p and miR-451a improves detectability of rare microRNAs in peripheral blood-derived small RNA sequencing libraries.  NAR Genomics and Bioinformatics, 2 (1). [BibTeX]
• Fart, F. , Rajan, S. K. , Wall, R. , Rangel, I. , Ganda Mall, J. P. , Tingö, L. , Brummer, R. J. , Repsilber, D. & et al. (2020). Differences in Gut Microbiome Composition between Senior Orienteering Athletes and Community-Dwelling Older Adults.  Nutrients, 12 (9). [BibTeX]
• Ganda Mall, J. P. , Fart, F. , Sabet, J. A. , Lindqvist, C. M. , Nestestog, R. , Hegge, F. T. , Keita, Å. V. , Brummer, R. J. & et al. (2020). Effects of Dietary Fibres on Acute Indomethacin-Induced Intestinal Hyperpermeability in the Elderly: A Randomised Placebo Controlled Parallel Clinical Trial.  Nutrients, 12 (7). [BibTeX]
• Vatn, S. , Carstens, A. , Kristoffersen, A. B. , Bergemalm, D. , Casén, C. , Moen, A. E. F. , Tannaes, T. M. , Lindstrøm, J. & et al. (2020). Faecal microbiota signatures of IBD and their relation to diagnosis, disease phenotype, inflammation, treatment escalation and anti-TNF response in a European Multicentre Study (IBD-Character).  Scandinavian Journal of Gastroenterology, 55 (10), 1146-1156. [BibTeX]
• Rajan, S. K. , Lindqvist, C. M. , Brummer, R. J. , Schoultz, I. & Repsilber, D. (2019). Phylogenetic microbiota profiling in fecal samples depends on combination of sequencing depth and choice of NGS analysis method.  PLOS ONE, 14 (9). [BibTeX]
• Holster, S. , Lindqvist, C. M. , Repsilber, D. , Salonen, A. , de Vos, W. , König, J. & Brummer, R. J. (2019). The Effect of Allogenic Versus Autologous Fecal Microbiota Transfer on Symptoms, Visceral Perception and Fecal and Mucosal Microbiota in Irritable Bowel Syndrome: A Randomized Controlled Study.  Clinical and Translational Gastroenterology, 10 (4). [BibTeX]
• Carstens, A. , Dicksved, J. , Nelson, R. , Lindqvist, C. M. , Andreasson, A. , Bohr, J. , Tysk, C. , Talley, N. J. & et al. (2019). The Gut Microbiota in Collagenous Colitis Shares Characteristics With Inflammatory Bowel Disease-Associated Dysbiosis.  Clinical and Translational Gastroenterology, 10 (7). [BibTeX]
• Ganda Mall, J. , Östlund-Lagerström, L. , Lindqvist, C. M. , Algilani, S. , Rasoal, D. , Repsilber, D. , Brummer, R. J. , V. Keita, Å. & et al. (2018). Are self-reported gastrointestinal symptoms among older adults associated with increased intestinal permeability and psychological distress?.  BMC Geriatrics, 18 (1). [BibTeX]
• Ganda Mall, J. P. , Löfvendahl, L. , Lindqvist, C. M. , Brummer, R. J. , Keita, Å. V. & Schoultz, I. (2018). Differential effects of dietary fibres on colonic barrier function in elderly individuals with gastrointestinal symptoms.  Scientific Reports, 8 (1). [BibTeX]
• Keita, Å. V. , Lindqvist, C. M. , Öst, Å. , Magana, C. D. L. , Schoultz, I. & Halfvarson, J. (2018). Gut barrier dysfunction: a primary defect in twins with Crohn's disease predominantly caused by genetic predisposition.  Journal of Crohn's & Colitis, 12 (10), 1200-1209. [BibTeX]

Konferensbidrag

• Visuri, I. , Dannenberg, K. , Salomon, B. , Lundström, M. L. , Bergemalm, D. , Eriksson, C. , Lindqvist, M. , Keita, Å. V. & et al. (2025). Correlations of clinical characteristics and serum proteins with drug levels: A multicentre cohort study of patients with inflammatory bowel disease starting biologics. I:  Journal of Crohn's & Colitis. Oxford University Press. [BibTeX]
• Smeds, P. , Almlöf, J. , Munters, A. , Mähler, N. , Nordin, J. , Melin, M. , Köhn, L. , Mesilaakso, L. & et al. (2024). Hydra-genetics, a modular framework for bioinformatics pipeline development. I:  European Journal of Human Genetics. Konferensbidrag vid 56th Annual Conference of the European-Society-of-Human-Genetics (ESHG), Glasgow, Scotland, June 10-13, 2023. (ss. 675-676). Nature Portfolio. [BibTeX]
• Koskela, A. , Lindqvist, C. M. , Asghar, N. , Johansson, M. , Sundqvist, M. , Mölling, P. & Stenmark, B. (2023). Comparison of SARS-CoV-2 whole genome sequencing using tiled amplicon enrichment and bait hybridization. Konferensbidrag vid Smögen Virology Symposium 2023, Smögen, Sweden, August 24-26, 2023. [BibTeX]
• Asghar, N. , Jaafar, R. , Lindqvist, C. M. , Ljunberg, K. & Johansson, M. (2023). Design, rescue, and characterization of Langat virus infectious clone by next generation sequencing. Konferensbidrag vid 20th Smögen Summer Symposium on Virology, Smögen, August 24-26, 2023. (ss. 51-51). [BibTeX]
• Koskela, A. , Qvick, A. , Jakobsen, I. , Lindqvist, C. M. , Farkas, S. A. , Green, A. , Isaksson, H. S. , Holmgren, B. & et al. (2022). Evaluation of Microsatellite instability score from GMS560 DNA panel. Konferensbidrag vid Cutting-Edge Implementation of Precision Medicine in Europe, Stockholm, Sweden, September 22-23, 2022. [BibTeX]
• Juzenas, S. , Hübenthal, M. , Zeissig, S. , Strüning, N. , Keller, A. , Schulte, D. , D'Amato, M. , Lindqvist, C. M. & et al. (2019). Sequencing-based hematopoietic miRNA landscape reveals common and distinct features of autoimmune inflammatory phenotypes. I:  Journal of Crohn's & Colitis. Oxford University Press. [BibTeX]
• Keita, A. V. , Lindqvist, C. M. , Ost, A. , Magana, C. D. L. , Schoultz, I. & Halfvarson, J. (2018). Gut barrier dysfunction: a primary defect in twins with Crohn's disease predominantly caused by genetic predisposition. I:  Journal of Crohn's & Colitis. Oxford University Press. [BibTeX]

Manuskript

• Grännö, O. , Bergemalm, D. , Lindqvist, C. M. , Hedin, C. R. H. , Carlson, M. , Dannenberg, K. , Andersson, E. , Strid, H. & et al. A protein signature for prediction of disease course in newly diagnosed ulcerative colitis. [BibTeX]
• Holster, S. , Repsilber, D. , Geng, D. , Hyötyläinen, T. , Salonen, A. , Lindqvist, C. M. , Rajan, S. K. , De Vos, W. M. & et al. Correlations between microbiota and metabolites after faecal microbiota transfer in irritable bowel syndrome. [BibTeX]
• Visuri, I. , Dannenberg, K. , Salomon, B. , Ling Lundström, M. , Bergemalm, D. , Eriksson, C. , Lindqvist, C. M. , Keita, Å. V. & et al. Correlations of clinical characteristics and serum proteins with drug levels : A multicentre cohort study of patients with inflammatory bowel disease starting biologics. [BibTeX]
• Ganda Mall, J. , Fart, F. , Sabet, J. , Lindqvist, C. , Keita, Å. V. , Brummer, R. J. & Schoultz, I. Effects of dietary fibres on indomethacin-induced intestinal permeability in elderly : A randomised placebo controlled parallel clinical trial. [BibTeX]
• Holster, S. , Repsilber, D. , Geng, D. , Hyötyläinen, T. , Lindqvist, C. M. , de Vos, W. , Brummer, R. J. & König, J. Faecal microbiota transfer in irritable bowel syndrome results inaltered correlations between the gut microbiota and its metabolites. [BibTeX]
• Rajan, S. K. , Lindqvist, C. M. , Sihlbom, C. , Olsson, B. , Brummer, R. J. , Schoultz, I. & Repsilber, D. Functional proteomics profiles in faecal sample microbiomes : Validating NGS-based predictions with LC-MS proteomics. [BibTeX]
• Fart, F. , Tingö, L. , Engelheart, S. , Lindqvist, C. M. , Brummer, R. J. , Kihlgren, A. & Schoultz, I. Gut Health and its Associations to Well-being and Nutrient intake in Community-Dwelling Older Adults. [BibTeX]
• Carstens, A. , Björkqvist, O. , Lindqvist, C. M. , Rangel, I. , Repsilber, D. , Eriksson, C. , Bergemalm, D. , Bresso, F. & et al. Gut microbiota associated with treatment outcome to biological treatment in inflammatory bowel disease. [BibTeX]
• Grännö, O. , Thunberg, J. , Ludvigsson, J. F. , Kuja-Halkola, R. , Lindqvist, C. M. & Halfvarson, J. Heritability of Crohn’s disease and ulcerative colitis : A Swedish nationwide population-based twin study. [BibTeX]
• Fart, F. , Amcoff, K. , Bergemalm, D. , Andersson, E. , Kalla, R. , Satsangi, J. , Lindqvist, C. M. , Halfvarson, J. & et al. Loss of tolerance to microbial antigens in preclinical Crohn’s disease differs with age at diagnosis : A twin study. [BibTeX]
• Qvick, A. , Adolfsson, E. , Tornéus, L. , Lindqvist, C. M. , Carlsson, J. , Stenmark, B. , Karlsson, C. & Helenius, G. Methylation patterns in cell-free DNA for pan-cancer detection. [BibTeX]
• Grännö, O. , Lindqvist, C. M. , Bergemalm, D. , Salomon, B. , Hedin, C. , Carlson, M. , Dannenberg, K. , Strid, H. & et al. The mucosa-associated gut microbiome in newly diagnosed inflammatory bowel disease. [BibTeX]