Matej Oresic
Tjänstetitel: Professor Organisation: Institutionen för medicinska vetenskaper
E-post:
Telefon: 019 302137
Rum: C2201
Om Matej Oresic
Matej Orešič har en doktorsexamen i biofysik från Cornell University. Han är en Professor i medicinsk vetenskap med inriktning systemmedicin vid Örebro Universitet, samt gruppledare inom systems medicin vid Åbo Centrum för Bioteknik, Åbo Universitet och en huvudforskare vid Finlands Akademis Centrum för Excellens inom Molekylär System Immunologi och Fysiologiforskning.
Matejs forskning är framför allt inriktad mot metabolomik inom biomedicin och integrativ bioinformatik. Fokus ligger på identifieringen av sjukdomssårbarheter associerade med olika metaboliska fenotyper och de underliggande mekanismerna som kopplar samman dessa sårbarheter med utvecklingen av specifika störningar, med särskild inriktning på fetma och diabetes och deras co-morbiditeter.
Dr. Orešič har också initierat det populära MZmine open source-projektet, vilket har lett till en populär mjukvara för databehandling av metabolomics. Tidigare, Dr. Orešič var huvudforskare vid Steno Diabetes Center (Gentofte, Danmark), forskarprofessor vid VTT Tekniska Forskningscentralen i Finland (Esbo, Finland), chef för beräkningsbiologi och modellering vid Beyond Genomics, Inc. (Waltham / MA) Och bioinformatiker vid LION Bioscience Research i Cambridge / MA. År 2016 fick Dr. Oresic livstidens honorärmedlemspris från Metabolomics Society. Han är medgrundare och för närvarande styrelseordförande för Nordic Metabolomics Society.
Dr Oresic har nyligen varit ordförande för två internationella metabolomikmöten:
- 1st Nordic Metabolomics Conference (Örebro, Sweden, August 26-28, 2018)
- Gordon Research Conference - Metabolomics and Human Health (Ventura, CA, USA, February 3-8, 2019)
Forskningsprojekt
- Blodbaserad metabolomik för att förutsäga svårighetsgrad och patient prognos vid traumatisk hjärnskada (meTBI)
- EPoS - Elucidating Pathways of Steatohepatitis
- Human exposure to per- and polyfluoroalkyl substances? Role of the gut microbiome and bile acid metabolism in mediating impact (PFASgut)
- Hälsoeffekter av miljöexponering tidigt i livet
- Lipid pathways en route to islet autoimmunity and type 1 diabetes
- LipidNET- Pan-European Network in Lipidomics and Epilipidomics?
- LITMUS
- Metabolomic and Proteomic markers staging progression to type 1 diabetes in autoantibody positive children
- Mother-infant interactions in relation to potential biomarkers of beta-cell autoimmunity and type 1 diabetes
- Rituximab för schizofrenispektrumsjukdomar. En pilotstudie.
- Rituximab för Tvångssyndrom. En pilotstudie.
- Sen debut av inflammatorisk tarmsjukdom
Forskargrupper
Publikationer
Artiklar i tidskrifter |
Artiklar, forskningsöversikter |
Kapitel i böcker, del av antologier |
Artiklar i tidskrifter
Lamichhane, S. , Dickens, A. M. , Sen, P. , Laurikainen, H. , Borgan, F. , Suvisaari, J. , Hyötyläinen, T. , Howes, O.
& et al.
(2021). Association Between Circulating Lipids and Future Weight Gain in Individuals With an At-Risk Mental State and in First-Episode Psychosis. Schizophrenia Bulletin, 47 (1), 160-169.
Mikolić, A. , van Klaveren, D. , Oude Groeniger, J. , Wiegers, E. J. A. , Lingsma, H. F. , Zeldovich, M. , von Steinbüchel, N. , Roeters van Lennep, J. E.
& et al.
(2021). Differences between Men and Women in Treatment and Outcome after Traumatic Brain Injury. Journal of Neurotrauma, 38 (2), 235-251.
Dickens, A. M. , Sen, P. , Kempton, M. J. , Barrantes-Vidal, N. , Iyegbe, C. , Nordentoft, M. , Pollak, T. , Riecher-Rössler, A.
& et al.
(2021). Dysregulated Lipid Metabolism Precedes Onset of Psychosis. Biological Psychiatry, 89 (3), 288-297.
Andelic, N. , Røe, C. , Brunborg, C. , Zeldovich, M. , Løvstad, M. , Løke, D. , Borgen, I. M. , Voormolen, D. C.
& et al.
(2021). Frequency of fatigue and its changes in the first 6 months after traumatic brain injury: results from the CENTER-TBI study. Journal of Neurology, 268 (1), 61-73.
Lamichhane, S. , Sen, P. , Alves, M. A. , Ribeiro, H. C. , Raunioniemi, P. , Hyötyläinen, T.
& Oresic, M. (2021). Linking Gut Microbiome and Lipid Metabolism: Moving beyond Associations. Metabolites, 11 (1).
Mikolić, A. , Polinder, S. , Steyerberg, E. W. , Retel Helmrich, I. R. A. , Giacino, J. T. , Maas, A. I. R. , van der Naalt, J. , Voormolen, D. C.
& et al.
(2021). Prediction of Global Functional Outcome and Post-Concussive Symptoms after Mild Traumatic Brain Injury: External Validation of Prognostic Models in the Collaborative European NeuroTrauma Effectiveness Research in Traumatic Brain Injury (CENTER-TBI) Study. Journal of Neurotrauma, 38 (2), 196-209.
Salonurmi, T. , Nabil, H. , Ronkainen, J. , Hyötyläinen, T. , Hautajärvi, H. , Savolainen, M. J. , Tolonen, A. , Oresic, M.
& et al.
(2020). 4β-Hydroxycholesterol Signals From the Liver to Regulate Peripheral Cholesterol Transporters.. Frontiers in Pharmacology, 11.
Huie, J. R. , Mondello, S. , Lindsell, C. J. , Antiga, L. , Yuh, E. L. , Zanier, E. R. , Masson, S. , Rosario, B. L.
& et al.
(2020). Biomarkers for Traumatic Brain Injury: Data Standards and Statistical Considerations. Journal of Neurotrauma.
Segal, E. , Oresic, M.
& Vilmes, P. (2020). Building an international consortium for tracking coronavirus health status. Nature Medicine, 26 (8), 1161-1165.
Feng, J. , van Veen, E. , Yang, C. , Huijben, J. A. , Lingsma, H. F. , Gao, G. , Jiang, J. , Maas, A. I. R.
& et al.
(2020). Comparison of Care System and Treatment Approaches for Patients with Traumatic Brain Injury in China versus Europe: A CENTER-TBI Survey Study. Journal of Neurotrauma, 37 (16), 1806-1817.
Sen, P. , Lamichhane, S. , Mathema, V. B. , McGlinchey, A. J. , Dickens, A. M. , Khoomrung, S.
& Oresic, M. (2020). Deep learning meets metabolomics: a methodological perspective. Briefings in Bioinformatics.
Xu, S. , Wu, B. , Oresic, M. , Xie, Y. , Yao, P. , Wu, Z. , Lv, X. , Chen, H.
& et al.
(2020). Double Derivatization Strategy for High-Sensitivity and High-Coverage Localization of Double Bonds in Free Fatty Acids by Mass Spectrometry. Analytical Chemistry, 92 (9), 6446-6455.
Sinisalu, L. , Sen, P. , Salihovic, S. , Virtanen, S. M. , Hyöty, H. , Ilonen, J. , Toppari, J. , Veijola, R.
& et al.
(2020). Early-life exposure to perfluorinated alkyl substances modulates lipid metabolism in progression to celiac disease. Environmental Research, 188.
Vali, Y. , Lee, J. , Boursier, J. , Spijker, R. , Löffler, J. , Verheij, J. , Brosnan, M. J. , Böcskei, Z.
& et al.
(2020). Enhanced liver fibrosis test for the non-invasive diagnosis of fibrosis in patients with NAFLD: A systematic review and meta-analysis. Journal of Hepatology, 73 (2), 252-262.
Anstee, Q. M. , Darlay, R. , Cockell, S. , Meroni, M. , Govaere, O. , Tiniakos, D. , Burt, A. D. , Bedossa, P.
& et al.
(2020). Genome-wide association study of non-alcoholic fatty liver and steatohepatitis in a histologically-characterised cohort. Journal of Hepatology, 73 (3), 505-515.
Böhm, J. K. , Güting, H. , Thorn, S. , Schäfer, N. , Rambach, V. , Schöchl, H. , Grottke, O. , Rossaint, R.
& et al.
(2020). Global Characterisation of Coagulopathy in Isolated Traumatic Brain Injury (iTBI): A CENTER-TBI Analysis. Neurocritical Care.
Voormolen, D. C. , Polinder, S. , von Steinbuechel, N. , Feng, Y. , Wilson, L. , Oppe, M. , Haagsma, J. A.
& CENTER-TBI participants and investigators, -. (2020). Health-related quality of life after traumatic brain injury: deriving value sets for the QOLIBRI-OS for Italy, The Netherlands and The United Kingdom.. Quality of Life Research, 29 (11), 3095-3107.
Timmers, M. , van Dijck, J. T. J. M. , van Wijk, R. P. J. , Legrand, V. , van Veen, E. , Maas, A. I. R. , Menon, D. K. , Citerio, G.
& et al.
(2020). How do 66 European institutional review boards approve one protocol for an international prospective observational study on traumatic brain injury? Experiences from the CENTER-TBI study. BMC Medical Ethics, 21 (1).
Luukkonen, P. K. , Tukiainen, T. , Juuti, A. , Sammalkorpi, H. , Haridas, P. A. N. , Niemelä, O. , Arola, J. , Orho-Melander, M.
& et al.
(2020). Hydroxysteroid 17-β dehydrogenase 13 variant increases phospholipids and protects against fibrosis in nonalcoholic fatty liver disease. JCI Insight, 5 (5).
Mathieu, F. , Güting, H. , Gravesteijn, B. , Monteiro, M. , Glocker, B. , Kornaropoulos, E. N. , Kamnistas, K. , Robertson, C. S.
& et al.
(2020). Impact of Antithrombotic Agents on Radiological Lesion Progression in Acute Traumatic Brain Injury: A CENTER-TBI Propensity-Matched Cohort Analysis. Journal of Neurotrauma, 37 (19), 2069-2080.
van Wijk, R. P. J. , van Dijck, J. T. J. M. , Timmers, M. , van Veen, E. , Citerio, G. , Lingsma, H. F. , Maas, A. I. R. , Menon, D. K.
& et al.
(2020). Informed consent procedures in patients with an acute inability to provide informed consent: Policy and practice in the CENTER-TBI study. Journal of critical care, 59, 6-15.
Thomas, I. , Dickens, A. M. , Posti, J. P. , Mohammadian, M. , Ledig, C. , Takala, R. S. K. , Hyötyläinen, T. , Tenovuo, O.
& et al.
(2020). Integrative Analysis of Circulating Metabolite Profiles and Magnetic Resonance Imaging Metrics in Patients with Traumatic Brain Injury. International Journal of Molecular Sciences, 21 (4).
Dickens, A. M. , Borgan, F. , Laurikainen, H. , Lamichhane, S. , Marques, T. , Rönkkö, T. , Veronese, M. , Lindeman, T.
& et al.
(2020). Links between central CB1-receptor availability and peripheral endocannabinoids in patients with first episode psychosis. NPJ schizophrenia, 6 (1).
Gravesteijn, B. Y. , Nieboer, D. , Ercole, A. , Lingsma, H. F. , Nelson, D. , van Calster, B. , Steyerberg, E. W.
& The CENTER-TBI collaborators, . (2020). Machine learning algorithms performed no better than regression models for prognostication in traumatic brain injury. Journal of Clinical Epidemiology, 122, 95-107.
Luukkonen, P. K. , Juuti, A. , Sammalkorpi, H. , Penttilä, A. K. , Oresic, M. , Hyötyläinen, T. , Arola, J. , Orho-Melander, M.
& et al.
(2020). MARC1 variant rs2642438 increases hepatic phosphatidylcholines and decreases severity of non-alcoholic fatty liver disease in humans. Journal of Hepatology, 73 (3), 725-726.
Sen, P. , Dickens, A. M. , López-Bascón, M. A. , Lindeman, T. , Kemppainen, E. , Lamichhane, S. , Rönkkö, T. , Ilonen, J.
& et al.
(2020). Metabolic alterations in immune cells associate with progression to type 1 diabetes. Diabetologia, 63 (5), 1017-1031.
Dijkland, S. A. , Helmrich, I. R. A. R. , Nieboer, D. , van der Jagt, M. , Dippel, D. W. J. , Menon, D. K. , Stocchetti, N. , Maas, A. I. R.
& et al.
(2020). Outcome Prediction after Moderate and Severe Traumatic Brain Injury: External Validation of Two Established Prognostic Models in 1742 European Patients. Journal of Neurotrauma.
Fart, F. , Salihovic, S. , McGlinchey, A. J. , Oresic, M. , Halfvarson, J. , Hyötyläinen, T.
& Schoultz, I. (2020). Per- and polyfluoroalkyl substances (PFAS) are significantly increased in patients with late-onset of ulcerative colitis. Journal of Crohn's & Colitis, 14 (Suppl. 1), S138-S139.
Jacob, L. , Cogné, M. , Tenovuo, O. , Røe, C. , Andelic, N. , Majdan, M. , Ranta, J. , Ylen, P.
& et al.
(2020). Predictors of Access to Rehabilitation in the Year Following Traumatic Brain Injury: A European Prospective and Multicenter Study. Neurorehabilitation and Neural Repair, 34 (9), 814-830.
McGlinchey, A. J. , Sinioja, T. , Lamichhane, S. , Sen, P. , Bodin, J. , Siljander, H. , Dickens, A. M. , Geng, D.
& et al.
(2020). Prenatal exposure to perfluoroalkyl substances modulates neonatal serum phospholipids, increasing risk of type 1 diabetes. Environment International, 143.
Vande Vyvere, T. , De La Rosa, E. , Wilms, G. , Nieboer, D. , Steyerberg, E. , Maas, A. I. R. , Verheyden, J. , van den Hauwe, L.
& et al.
(2020). Prognostic Validation of the NINDS Common Data Elements for the Radiologic Reporting of Acute Traumatic Brain Injuries: A CENTER-TBI Study.. Journal of Neurotrauma, 37 (11), 1269-1282.
Segal, E. , Oresic, M.
& Wilmes, P. (2020). Publisher Correction: Building an international consortium for tracking coronavirus health status.. Nature Medicine, 26 (8).
Salihovic, S. , Dickens, A. M. , Schoultz, I. , Fart, F. , Sinisalu, L. , Lindeman, T. , Halfvarson, J. , Oresic, M.
& et al.
(2020). Simultaneous determination of perfluoroalkyl substances and bile acids in human serum using ultra-high-performance liquid chromatography-tandem mass spectrometry. Analytical and Bioanalytical Chemistry, 412 (10), 2251-2259.
Qadri, S. , Lallukka-Brück, S. , Luukkonen, P. K. , Zhou, Y. , Gastaldelli, A. , Orho-Melander, M. , Sammalkorpi, H. , Juuti, A.
& et al.
(2020). The PNPLA3-I148M variant increases polyunsaturated triglycerides in human adipose tissue. Liver international (Print), 40 (9), 2128-2138.
Gravesteijn, B. Y. , Sewalt, C. A. , Ercole, A. , Akerlund, C. , Nelson, D. , Maas, A. I. R. , Menon, D. , Lingsma, H. F.
& et al.
(2020). Toward a New Multi-Dimensional Classification of Traumatic Brain Injury: A Collaborative European NeuroTrauma Effectiveness Research for Traumatic Brain Injury Study. Journal of Neurotrauma, 37 (7), 1002-1010.
Gravesteijn, B. Y. , Sewalt, C. A. , Nieboer, D. , Menon, D. K. , Maas, A. , Lecky, F. , Klimek, M. , Lingsma, H. F.
& et al.
(2020). Tracheal intubation in traumatic brain injury: a multicentre prospective observational study. British Journal of Anaesthesia, 125 (4), 505-517.
Govaere, O. , Cockell, S. , Tiniakos, D. , Queen, R. , Younes, R. , Vacca, M. , Alexander, L. , Ravaioli, F.
& et al.
(2020). Transcriptomic profiling across the nonalcoholic fatty liver disease spectrum reveals gene signatures for steatohepatitis and fibrosis. Science Translational Medicine, 12 (572).
Wilson, L. , Horton, L. , Kunzmann, K. , Sahakian, B. J. , Newcombe, V. F. , Stamatakis, E. A. , von Steinbuechel, N. , Cunitz, K.
& et al.
(2020). Understanding the relationship between cognitive performance and function in daily life after traumatic brain injury.. Journal of Neurology, Neurosurgery and Psychiatry.
Steyerberg, E. W. , Wiegers, E. , Sewalt, C. , Buki, A. , Citerio, G. , De Keyser, V. , Ercole, A. , Kunzmann, K.
& et al.
(2019). Case-mix, care pathways, and outcomes in patients with traumatic brain injury in CENTER-TBI: a European prospective, multicentre, longitudinal, cohort study. Lancet Neurology, 18 (10), 923-934.
Vande Vyvere, T. , Wilms, G. , Claes, L. , Martin Leon, F. , Nieboer, D. , Verheyden, J. , van den Hauwe, L. , Pullens, P.
& et al.
(2019). Central versus Local Radiological Reading of Acute Computed Tomography Characteristics in Multi-Center Traumatic Brain Injury Research.. Journal of Neurotrauma, 36 (7), 1080-1092.
Lamichhane, S. , Kemppainen, E. , Trošt, K. , Siljander, H. , Hyöty, H. , Ilonen, J. , Toppari, J. , Veijola, R.
& et al.
(2019). Circulating metabolites in progression to islet autoimmunity and type 1 diabetes. Diabetologia, 62 (12), 2287-2297.
Lamichhane, S. , Ahonen, L. , Dyrlund, T. S. , Dickens, A. M. , Siljander, H. , Hyöty, H. , Ilonen, J. , Toppari, J.
& et al.
(2019). Cord-Blood Lipidome in Progression to Islet Autoimmunity and Type 1 Diabetes. Biomolecules, 9 (1).
van Essen, T. A. , den Boogert, H. F. , Cnossen, M. C. , de Ruiter, G. C. W. , Haitsma, I. , Polinder, S. , Steyerberg, E. W. , Menon, D.
& et al.
(2019). Correction to: Variation in neurosurgical management of traumatic brain injury. Acta Neurochirurgica, 161 (3), 451-455.
Hernández-Alvarez, M. I. , Sebastián, D. , Vives, S. , Ivanova, S. , Bartoccioni, P. , Kakimoto, P. , Plana, N. , Veiga, S. R.
& et al.
(2019). Deficient Endoplasmic Reticulum-Mitochondrial Phosphatidylserine Transfer Causes Liver Disease. Cell, 177 (4), 881-895.e17.
Geng, D. , Musse, A. A. , Wigh, V. , Carlsson, C. , Engwall, M. , Oresic, M. , Scherbak, N.
& Hyötyläinen, T. (2019). Effect of perfluorooctanesulfonic acid (PFOS) on the liver lipid metabolism of the developing chicken embryo. Ecotoxicology and Environmental Safety, 170, 691-698.
Luukkonen, P. K. , Nick, A. , Hölttä-Vuori, M. , Thiele, C. , Isokuortti, E. , Lallukka-Brück, S. , Zhou, Y. , Hakkarainen, A.
& et al.
(2019). Human PNPLA3-I148M variant increases hepatic retention of polyunsaturated fatty acids. JCI Insight, 4 (16).
Madrid-Gambin, F. , Focking, M. , Sabherwal, S. , Heurich, M. , English, J. A. , O'Gorman, A. , Suvitaival, T. , Ahonen, L.
& et al.
(2019). Integrated Lipidomics and Proteomics Point to Early Blood-Based Changes in Childhood Preceding Later Development of Psychotic Experiences: Evidence From the Avon Longitudinal Study of Parents and Children. Biological Psychiatry, 86 (1), 25-34.
Playdon, M. C. , Joshi, A. D. , Tabung, F. K. , Cheng, S. , Henglin, M. , Kim, A. , Lin, T. , van Roekel, E. H.
& et al.
(2019). Metabolomics Analytics Workflow for Epidemiological Research: Perspectives from the Consortium of Metabolomics Studies (COMETS). Metabolites, 9 (7).
Sen, P. , Carlsson, C. , Virtanen, S. M. , Simell, S. , Hyöty, H. , Ilonen, J. , Toppari, J. , Veijola, R.
& et al.
(2019). Persistent Alterations in Plasma Lipid Profiles Before Introduction of Gluten in the Diet Associated With Progression to Celiac Disease. Clinical and Translational Gastroenterology, 10.
Ahonen, L. , Jäntti, S. , Suvitaival, T. , Theilade, S. , Risz, C. , Kostiainen, R. , Rossing, P. , Oresic, M.
& et al.
(2019). Targeted Clinical Metabolite Profiling Platform for the Stratification of Diabetic Patients. Metabolites, 9 (9).
Yu, B. , Oresic, M.
& Moore, S. C. (2019). The Consortium of Metabolomics Studies (COMETS): Metabolomics in 47 Prospective Cohort Studies. American Journal of Epidemiology, 188 (6), 991-1012.
Sen, P. , Lamichhane, S. , Dickens, A.
& Oresic, M. (2019). The Role of Omic Technologies in the Study of the Human Gut Microbiome. Reference Module in Food Science.
Pedersen, H. K. , Forslund, S. K. , Gudmundsdottir, V. , Østergaard Petersen, A. , Hildebrand, F. , Hyötyläinen, T. , Nielsen, T. , Hansen, T.
& et al.
(2018). A computational framework to integrate high-throughput '-omics' datasets for the identification of potential mechanistic links. Nature Protocols, 13 (12), 2781-2800.
Lamichhane, S. , Ahonen, L. , Dyrlund, T. S. , Siljander, H. , Hyöty, H. , Ilonen, J. , Toppari, J. , Veijola, R.
& et al.
(2018). A longitudinal plasma lipidomics dataset from children who developed islet autoimmunity and type 1 diabetes. Scientific Data, 5.
Schwarz, E. , Maukonen, J. , Hyytiäinen, T. , Kieseppä, T. , Oresic, M. , Sabunciyan, S. , Mantere, O. , Saarela, M.
& et al.
(2018). Analysis of microbiota in first episode psychosis identifies preliminary associations with symptom severity and treatment response. Schizophrenia Research, 192, 398-403.
Lamichhane, S. , Ahonen, L. , Dyrlund, T. S. , Kemppainen, E. , Siljander, H. , Hyöty, H. , Ilonen, J. , Toppari, J.
& et al.
(2018). Dynamics of Plasma Lipidome in Progression to Islet Autoimmunity and Type 1 Diabetes - Type 1 Diabetes Prediction and Prevention Study (DIPP). Scientific Reports, 8.
Lamichhane, S. , Sen, P. , Dickens, A. M. , Oresic, M.
& Bertram, H. C. (2018). Gut metabolome meets microbiome: A methodological perspective to understand the relationship between host and microbe. Methods, 149, 3-12.
Suvitaival, T. , Bondia-Pons, I. , Yetukuri, L. , Pöhö, P. , Nolan, J. J. , Hyötyläinen, T. , Kuusisto, J.
& Orešič, M. (2018). Lipidome as a predictive tool in progression to type 2 diabetes in Finnish men. Metabolism: Clinical and Experimental, 78 (January), 1-12.
Burla, B. , Arita, M. , Arita, M. , Bendt, A. K. , Cazenave-Gassiot, A. , Dennis, E. A. , Ekroos, K. , Han, X.
& et al.
(2018). MS-based lipidomics of human blood plasma: a community-initiated position paper to develop accepted guidelines. Journal of Lipid Research, 59 (10), 2001-2017.
Frank, E. , Maier, D. , Pajula, J. , Suvitaival, T. , Borgan, F. , Butz-Ostendorf, M. , Fischer, A. , Hietala, J.
& et al.
(2018). Platform for systems medicine research and diagnostic applications in psychotic disorders - The METSY project. European psychiatry, 50, 40-46.
Luukkonen, P. K. , Sädevirta, S. , Zhou, Y. , Kayser, B. , Ali, A. , Ahonen, L. , Lallukka, S. , Pelloux, V.
& et al.
(2018). Saturated Fat Is More Metabolically Harmful for the Human Liver Than Unsaturated Fat or Simple Sugars. Diabetes Care, 41 (8), 1732-1739.
Dickens, A. M. , Posti, J. P. , Takala, R. S. , Ala-Seppälä, H. M. , Mattila, I. , Coles, J. C. , Frantzén, J. , Hutchinson, P. J.
& et al.
(2018). Serum Metabolites Associated with Computed TomographyFindings after Traumatic Brain Injury. Journal of Neurotrauma, 35 (22), 2673-2683.
Grip, T. , Dyrlund, T. S. , Ahonen, L. , Domellöf, M. , Hernell, O. , Hyötyläinen, T. , Knip, M. , Lönnerdal, B.
& et al.
(2018). Serum, plasma and erythrocyte membrane lipidomes in infants fed formula supplemented with bovine milk fat globule membranes. Pediatric Research, 84 (5), 726-732.
Oresic, M. , Anderson, G. , Mattila, I. , Manoucheri, M. , Soininen, H. , Hyötyläinen, T.
& Basignani, C. (2018). Targeted Serum Metabolite Profiling Identifies Metabolic Signatures in Patients with Alzheimer's Disease, Normal Pressure Hydrocephalus and Brain Tumor. Frontiers in Neuroscience, 11.
OʼConnell, B. , Kelly, Á. M. , Mockler, D. , Oresic, M. , Denvir, K. , Farrell, G. , Janigro, D.
& Wilson, F. (2018). Use of Blood Biomarkers in the Assessment of Sports-Related Concussion-A Systematic Review in the Context of Their Biological Significance. Clinical Journal of Sports Medicine, 28 (6), 561-571.
Bowden, J. A. , Hyötyläinen, T. , Oresic, M.
& Zhou, S. (2017). Harmonizing Lipidomics: NIST Interlaboratory Comparison Exercise for Lipidomics using Standard Reference Material 1950 Metabolites in Frozen Human Plasma. Journal of Lipid Research, 58 (12), 2275-2288.
Martínez-Sánchez, N. , Seoane-Collazo, P. , Contreras, C. , Varela, L. , Villarroya, J. , Rial-Pensado, E. , Buqué, X. , Aurrekoetxea, I.
& et al.
(2017). Hypothalamic AMPK-ER Stress-JNK1 Axis Mediates the Central Actions of Thyroid Hormones on Energy Balance. Cell Metabolism, 26 (1), 212-229.e12.
O'Gorman, A. , Suvitaival, T. , Ahonen, L. , Cannon, M. , Zammit, S. , Lewis, G. , Roche, H. M. , Mattila, I.
& et al.
(2017). Identification of a plasma signature of psychotic disorder in children and adolescents from the Avon Longitudinal Study of Parents and Children (ALSPAC) cohort. Translational Psychiatry, 7.
Luukkonen, P. K. , Zhou, Y. , Haridas, N. P. A. , Dwivedi, O. P. , Hyötyläinen, T. , Ali, A. , Juuti, A. , Leivonen, M.
& et al.
(2017). Impaired hepatic lipid synthesis from polyunsaturated fatty acids in TM6SF2 E167K variant carriers with NAFLD. Journal of Hepatology, 67 (1), 128-136.
Hyötyläinen, T. , Ahonen, L. , Pöhö, P.
& Oresic, M. (2017). Lipidomics in biomedical research-practical considerations. Biochimica et Biophysica Acta, 1862 (8), 800-803.
Jørgenrud, B. , Stene, L. C. , Tapia, G. , Bøås, H. , Pepaj, M. , Berg, J. P. , Thorsby, P. M. , Orešič, M.
& et al.
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Oksman-Caldentey, K. , Inzé, D.
& Oresic, M. (2004). Connecting genes to metabolites by a systems biology approach. Proceedings of the National Academy of Sciences of the United States of America, 101 (27), 9949-9950.
Clish, C. B. , Davidov, E. , Oresic, M. , Plasterer, T. N. , Lavine, G. , Londo, T. , Meys, M. , Snell, P.
& et al.
(2004). Integrative biological analysis of the APOE*3-leiden transgenic mouse. Omics, 8 (1), 3-13.
Davidov, E. , Clish, C. B. , Oresic, M. , Meys, M. , Stochaj, W. , Snell, P. , Lavine, G. , Londo, T. R.
& et al.
(2004). Methods for the differential integrative omic analysis of plasma from a transgenic disease animal model. Omics, 8 (4), 267-288.
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& et al.
(2004). Phenotype characterisation using integrated gene transcript, protein and metabolite profiling. Applied bioinformatics, 3 (4), 205-217.
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& Shalloway, D. (2003). Tracing specific synonymous codon-secondary structure correlations through evolution. Journal of Molecular Evolution, 56 (4), 473-484.
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& Shalloway, D. (1998). Specific correlations between relative synonymous codon usage and protein secondary structure. Journal of Molecular Biology, 281 (1), 31-48.
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Artiklar, forskningsöversikter
Alves, M. A. , Lamichhane, S. , Dickens, A. , McGlinchey, A. J. , Ribeiro, H. C. , Sen, P. , Wei, F. , Hyötyläinen, T.
& et al.
(2021). Systems biology approaches to study lipidomes in health and disease. Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids, 1866 (2).
Oresic, M. , McGlinchey, A. J. , Wheelock, C. E.
& Hyötyläinen, T. (2020). Metabolic Signatures of the Exposome-Quantifying the Impact of Exposure to Environmental Chemicals on Human Health. Metabolites, 10 (11).
Fang, W. , Santosh, L. , Oresic, M.
& Hyötyläinen, T. (2019). Lipidomes in health and disease: Analytical strategies and considerations. TrAC. Trends in analytical chemistry, 120.
Sen, P.
& Oresic, M. (2019). Metabolic Modeling of Human Gut Microbiota on a Genome Scale: An Overview. Metabolites, 9 (2).
Sen, P. , Kempainen, E.
& Oresic, M. (2018). Perspectives on Systems Modeling of Human Peripheral Blood Mononuclear Cells. Frontiers in Molecular Biosciences, 4.
Posti, J. P. , Dickens, A. M. , Orešič, M. , Hyötyläinen, T.
& Tenovuo, O. (2017). Metabolomics Profiling As a Diagnostic Tool in Severe Traumatic Brain injury. Frontiers in Neurology, 8.
Rodriguez-Cuenca, S. , Pellegrinelli, V. , Campbell, M. , Oresic, M.
& Vidal-Puig, A. (2017). Sphingolipids and glycerophospholipids.: The "ying and yang" of lipotoxicity in metabolic diseases. Progress in lipid research, 66, 14-29.
Marinković, T.
& Oresic, M. (2016). Modeling strategies to study metabolic pathways in progression to type 1 diabetes: Challenges and opportunities. Archives of Biochemistry and Biophysics, 589, 131-7.
Hyötyläinen, T.
& Oresic, M. (2015). Optimizing the lipidomics workflow for clinical studies: practical considerations. Analytical and Bioanalytical Chemistry, 407 (17), 4973-4993.
Hyötyläinen, T.
& Oresic, M. (2014). Systems biology strategies to study lipidomes in health and disease. Progress in lipid research, 55 (1), 43-60.
Hyötyläinen, T. , Bondia-Pons, I.
& Oresic, M. (2013). Lipidomics in nutrition and food research. Molecular Nutrition & Food Research, 57 (8), 1306-1318.
Denkert, C. , Bucher, E. , Hilvo, M. , Salek, R. , Oresic, M. , Griffin, J. , Brockmöller, S. , Klauschen, F.
& et al.
(2012). Metabolomics of human breast cancer: new approaches for tumor typing and biomarker discovery. Genome Medicine, 4 (4).
Seppänen-Laakso, T.
& Oresic, M. (2009). How to study lipidomes. Journal of Molecular Endocrinology, 42 (3), 185-190.
Jänis, M. T. , Laaksonen, R.
& Oresic, M. (2008). Metabolomic strategies to identify tissue-specific effects of cardiovascular drugs. Expert Opinion on Drug Metabolism & Toxicology, 4 (6), 665-680.
Katajamaa, M.
& Oresic, M. (2007). Data processing for mass spectrometry-based metabolomics. Journal of Chromatography A, 1158 (1-2), 318-328.
Curtis, R. K. , Oresic, M.
& Vidal-Puig, A. (2005). Pathways to the analysis of microarray data. Trends in Biotechnology, 23 (8), 429-435.
Kapitel i böcker, del av antologier
Lamichhane, S. , Sen, P. , Dickens, A. M. , Hyötyläinen, T.
& Orešič, M. (2018). An Overview of Metabolomics Data Analysis: Current Tools and Future Perspectives.
I:
Joaquim Jaumot; Carmen Bedia; Romà Tauler, Data Analysis for Omic Sciences: Methods and Applications (ss. 387-413).
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